| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0216 |
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| Symbol | |
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| ID | 1043759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 267640 |
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| End bp | 268626 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637143594 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | NP_742384 |
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| Protein GI | 26986959 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00586587 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCAAGA ACATTCCAAC GATTTTCCCC GGCACCCCTC CTCCCGAAGC CGCCCAGACT
TTACTGGCGT TACTCCACGC CCAAGGAGAG GTTGCCCGCC TGAGTGAGCG TGATCAGCTG
TTCAGCTCGT TGCTCGACAG CGTCAACGCA GTGCTCTGGG CCTTCGACTG GGAAACCCGT
CAGGTGCTGT ACGTGAGCCC AGCCTACGAG CGCATCTTCG GCCGCCCGGT CAGCCTGGTG
CTGGCTGACT ACAACGAATG GCGTGACAGC ATCTACCCCG ACGACCTCGA GTTCGCCGAA
CGTAGCCTGG CCCAGGTACT GCTCAAGGGC GCGGTGGAAG ACCGCGAGTA CCGCATCCTC
AATGCCGACG GGCAACTGCG CTGGCTGAGC GACAAGTGCT ACATCAACCA GCAGCACGAT
AGCGACCGGG TAATCATTGT CGGTATCGCC GAAGACATCA CCGAGAAGAA GCAGCTTGAA
GGCGAACTGC AGCGCCTGGC CACCACCGAC GTGCTGACCC AGAGCAGTAA CCGCAGGCAC
TTTTTCGAAT GTGCTCAGCA AGCCTTCGAC AGTGCACGCG AGGACGGTAC ACCGCTGGCT
TTCCTGCTGC TGGATATCGA CGACTTCAAA CGCATCAATG ACAGCTATGG CCACCAGGAA
GGCGACCAGG TGCTGCAACA CATCGCCGAC AGCGGCAAGG CCGTGCTACG CCGGGGCGAC
CTGTTCGGAC GCATTGGCGG CGAAGAATTT GCGGCGGTGT TTCCCGGCTG TACCGCCCAA
ATCGCGGAGC AGATTGCCGA GCGCTTGCAA CGGCAGATAC AGCACTTGAG CTTCAGCCAT
GGCCAGCAGA CGTACGGGGT GACGGTGAGC CAGGGGTTGA CCGGGCTGAC CGATGAGGAT
GTGGCGCTGG ACAGCCTGTA TGCGCGGGCC GATGCGGCAA TGTACCAGGC CAAGCGGCAG
GGCAAGAACC AGATAGTCCG CGGCTGA
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| Protein sequence | MAKNIPTIFP GTPPPEAAQT LLALLHAQGE VARLSERDQL FSSLLDSVNA VLWAFDWETR
QVLYVSPAYE RIFGRPVSLV LADYNEWRDS IYPDDLEFAE RSLAQVLLKG AVEDREYRIL
NADGQLRWLS DKCYINQQHD SDRVIIVGIA EDITEKKQLE GELQRLATTD VLTQSSNRRH
FFECAQQAFD SAREDGTPLA FLLLDIDDFK RINDSYGHQE GDQVLQHIAD SGKAVLRRGD
LFGRIGGEEF AAVFPGCTAQ IAEQIAERLQ RQIQHLSFSH GQQTYGVTVS QGLTGLTDED
VALDSLYARA DAAMYQAKRQ GKNQIVRG
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