Gene PP_0172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0172 
Symbol 
ID1043698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp224049 
End bp224912 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content60% 
IMG OID637143550 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionNP_742341 
Protein GI26986916 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACTA CACCTGTACG CCAGGAATAC GAGGTGCAGC TGGAGCCCCT GCTCAGTGTG 
CCTGTAGAAC GACAACTCCC CTTGGCCCAA CGCCTGTGGC AGCAAGGCTG GTTGAGAAAG
GCGGTCATAT TGCTGGTGAT CGCTGTGCTA TGGGAAACCG TTGCCCGCTA CCAGGACAAT
GACCTGCTGC TGCCAAGCTT TCTGCAAACC GCCACGGCGC TATGGGATGG CATGATCAGT
GGCGAACTGC CCGCCAAGGT CGGTGTTTCG CTGGTAATAC TGCTCAAAGG CTATGTGCTG
GGTATCGTCC TGGCCTTTGG CCTGACCAGC CTGGCGGTGT CGACCCAATT GGGCCGAGAC
TTACTGGGCA CGCTGACCTC GATGTTCAAC CCGTTGCCGG CCATTGCCCT GCTGCCGCTG
GCCTTGCTGT GGTTCGGGCT GGGTGACAAC AGCCTGATCT TCGTGCTGGT GCATTCGGTG
CTATGGGCGT TGGCGCTGAA TACCTATGCC GGCTTCCTCG GTGTGTCGGA GACGCTGCGC
ATGGCGGGCC GCAACTATGG TCTGAAGGGC CTGCGGCTGG TATTGCACAT CCTCGTGCCC
GCAGCCCTGC CGTCGATCCT GTCGGGGTTG AAGATCGGCT GGGCGTTTGC CTGGCGTACC
CTTATAGCCG CGGAATTAGT GTTTGGTGCC AGCAGTGGCA AAGGCGGGTT GGGTTGGTAC
ATCTTCCAGA ACCGCAACGA ACTGTATACC GACAAGGTCT TTGCCGGGTT GGCGGTGGTG
ATCCTGATCG GTCTGCTGGT GGAAGGACTG GTGTTCAATA CGCTGGAGCG GTTGACTGTG
CGGCGATGGG GGATGCAGCG CTAG
 
Protein sequence
MTTTPVRQEY EVQLEPLLSV PVERQLPLAQ RLWQQGWLRK AVILLVIAVL WETVARYQDN 
DLLLPSFLQT ATALWDGMIS GELPAKVGVS LVILLKGYVL GIVLAFGLTS LAVSTQLGRD
LLGTLTSMFN PLPAIALLPL ALLWFGLGDN SLIFVLVHSV LWALALNTYA GFLGVSETLR
MAGRNYGLKG LRLVLHILVP AALPSILSGL KIGWAFAWRT LIAAELVFGA SSGKGGLGWY
IFQNRNELYT DKVFAGLAVV ILIGLLVEGL VFNTLERLTV RRWGMQR