Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0166 |
Symbol | |
ID | 1043690 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 189994 |
End bp | 191370 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637143544 |
Product | HlyD family type I secretion membrane fusion protein |
Protein accession | NP_742335 |
Protein GI | 26986910 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000605389 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTTGCATA AGCTGGATAT GGGGCAGTTC AAGGACGGCC TGCGGCGCTA TTTCAAAGGC AGCGACTCGC TTGGCGGCCA GCCGCTGCCC GAGGTGAACA AGGCCCTGAT CGAAGATGCA CCGCGCGTGG TGCGGCTGAC CATCTGGGGC GTGATCCTGT TCTTCGTGTT CTTGATTGTA TGGGCCAGCG TCGCGCCCAT CGACGAAGTT ACGCGGGGTG AAGGCAAGGC CATTCCGTCT TCCAAGGTGC AGAAGATCCA GAACCTGGAG GGCGGCATCG TCGCCGAAAT CTTCGCCAAG GAGGGGCAGA TCGTCGAAGT GGGCCAGCCA TTGCTGCGCC TGGATGAAAC CCGCTTCGCC TCCAACGTTG GTGAAACCGA GGCTGACCGC CTGGCCATGG CCCTGCGAGT CGAACGTTTG AGTGCCGAGG TAGAGGACCG CCCGCTGATT ATCGACGAAA AGCTGCGTAA AGCCGCGCCA AACCAGGCGG CCAGTGAGGA GTCGCTGTAC CAGAGCCGGC GCCAGCAACT GCAGGACGAA ATTGGCGGCC TGCAACAGCA GTTGGTCCAA CGCCAGCAGG AGCTGCGCGA ATACAGCTCC AAACGCACCC AGTACGCCAA CAGCCTCGAG CTGCTGCGCA AGGAAATCAG CATGTCCGAA CCGCTGGTGG CAACCGGCGC GATTTCCCAG GTTGAAGTGC TGCGCCTGCG CCGTGCTGAA GTGGAAAACC GCGGTCAGCT GGACTCCACT GCGCTGGCGA TCCCGCGCGC AGAGGCGGCC ATACGCGAGG TGCAAAGCAA GATCGAAGAG ACGCGTGGCA AGTTCCGAAG CGAAGCGCTG ACCCAGCTGA ACGAGGCACG CACCGAACTG AACAAGGCTA CCGCCACCAG CAAGGCGCTG GACGACCGGG TGCACCGCAC ACTGGTCACC TCGCCCGTAC GCGGTATCGT CAAGCAACTG CTGGTGAACA CCATTGGCGG GGTAATCCAG CCAGGCAGTG ATATCATCGA AGTCGTGCCG CTGGACGACA CGCTGGTCAT TGAGGCGAAA ATTTTGCCCA AAGACATCGC CTTCCTGCAC CCTGGCCAGG AAGCGACGGT CAAGTTCACC GCGTATGACT ACACCATCTA CGGTGGGCTC AAGGCCAAGC TGGAGCAGAT TGGCGCCGAC ACCATTACCG ATGAAGACAA GAAGACTACG TATTACCTGA TCAAGCTGCG CACTGATCGC AGCCACCTGG GGACTGACGA GAAGCCACTG CTGATCATTC CGGGGATGGT GGCGACGGTG GACATCATGA CAGGCAAGAA AACCATCATG AGCTACCTGC TCAAGCCGAT CATGAAGGCG CGTTCGGAAG CGCTGCGCGA GCGGTGA
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Protein sequence | MLHKLDMGQF KDGLRRYFKG SDSLGGQPLP EVNKALIEDA PRVVRLTIWG VILFFVFLIV WASVAPIDEV TRGEGKAIPS SKVQKIQNLE GGIVAEIFAK EGQIVEVGQP LLRLDETRFA SNVGETEADR LAMALRVERL SAEVEDRPLI IDEKLRKAAP NQAASEESLY QSRRQQLQDE IGGLQQQLVQ RQQELREYSS KRTQYANSLE LLRKEISMSE PLVATGAISQ VEVLRLRRAE VENRGQLDST ALAIPRAEAA IREVQSKIEE TRGKFRSEAL TQLNEARTEL NKATATSKAL DDRVHRTLVT SPVRGIVKQL LVNTIGGVIQ PGSDIIEVVP LDDTLVIEAK ILPKDIAFLH PGQEATVKFT AYDYTIYGGL KAKLEQIGAD TITDEDKKTT YYLIKLRTDR SHLGTDEKPL LIIPGMVATV DIMTGKKTIM SYLLKPIMKA RSEALRER
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