Gene PP_0165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0165 
Symbol 
ID1043688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp187891 
End bp189837 
Gene Length1947 bp 
Protein Length648 aa 
Translation table11 
GC content62% 
IMG OID637143543 
ProductGGDEF domain-containing protein 
Protein accessionNP_742334 
Protein GI26986909 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000075441 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCACTGT TCAAACAATT GCTGTTGGCC ATTTGCCTGT TCCTGGTGGT CGCCTTCAGT 
GGCAGTTTCA TGGTCAGCCT GGAAAGCTCG CGCAGCCAGT ACGTCAACCA GCTGCGCTCG
CACGCCCAGG ATGCGGCCAC CGCACTGGCG CTTTCGCTGA CGCCGAATAT CGACGACCCA
GCGATGGTCG AGCTGATGGT CAGCTCGATT TTCGACAGTG GTTACTATGC AAGCATCAAG
GTCGTCGACC TGGGTTCCAA CGCCGTGCTG GTGGAGCGTC ACGCCGAGCC AGACCCTGGT
GGTGTGCCGC TTTGGTTCGT GCGCCTGATC GGCCTCGAGG CCGCCGGCGG CGATGCAATC
GTCAGTCGTG GCTGGCAGCA GGCCGCGCGC GTTGAAGTGA TCAGCCACCC GATGTTCGCC
ATTGCCAAGC TTTGGCAAAG CGCCTTGGGC AGCCTGGGTT GGTTGCTGTT GTGCGGTGCG
GCCAGTGCCG TGCTCGGTGC TTTGCTGTTG CGCCGCCAGT TGAGGCCGCT GGACTACATG
GTAGAGCAAT CTCACGCTAT TGCCCGCCGC GAATTCCTCA GCCTGCCAGA GTTGCCACGC
ACGCCGGAGC TACGCCGCGT AGTGCAAGCG ATGAACCAGA TGGTCGAGAA ACTCAAAGCC
CTGTTCACCG AGCAGGCCGA GCGCAGTGAG CGGCTGCGTG CGGAGTCCTA CCAGGACAGC
CTGACCGGGC TGTCGAACCG CCGCTATTTT GAAATGCAGC TGAACAATCG GGTAAGCAAC
CTGGAAGACG CGCGCGCCGG TTACCTGCTG TTGCTGCGGG TTCAGGGCCT GGCTGGCCTG
AACGCCCGCC TTGGCGGCCA GCGTACCGAC CAGTTGTTGC AAGCGGTAGG TGAACAGCTG
CGTCGTACTT GTGCCAGCTA CCCGGAAACC AACGACCTCA TTTCCCGCAG CCGCGGCGGC
GAGTTTGCAG TGCTGGCACC GGGCATGGTG CATGAGGAGG CAGTACACCT TGCCCAGGCT
CTGGAGGCAA CGTTGCAGAG CCTGCACGAA ACGGGGGCCA GTGATATCGA CCCGGTGGCT
TGTATAGGCC TGGCGCCATT CAGCCCTGGT GATTCACCCC AGGCATTGCT GAAGCTGGCC
GACGAGGCTC TGGCCCGCGC TGAGAACCAG CCAACGCCGG GCTGGGTATG CCTTGAGCAA
GGTGTTGCTG CGGTTGCTGC GGATAGTCAG CATGCCTGGC ACGAACGGCT CGACCAAGCG
TTCATCAATG GGCATTTCGA GTTGTTCTTC CAGCCAGTGA TAGAGTGCGC TTCCTCGCAA
CGGGTACTGC ACCACAAAGT TATTTCGCGT TTGCGCGATG GCCAGGGCGA GGCCTTGCCG
GCGGGCCGCT TCCTGCCTTG GCTGGAGCGC TTCGGCTGGA TGCCGCGGCT GGATGTGCTG
GTGCTGGAGA AAGTGTTGGC GCACCTGCGA GGGCATGACC AAGTGCTGGC GTTGAACCTG
TCCGCCGCCA CCCTGGCCGA CCCCAAGGCC CTTCAGCGCG TTTTCGAGCT GCTGGGCCAG
AATGCGGCGC TCGGTCCGCG GCTGGTTTTT GAAATTGGCG AGGAGCAGTT GCCTGAGCAG
GCAGCGTTGG AGCAACTCAC CCGGCGCCTG CATGGGCTTG GCTTCGGGTT GGCTTTGCAA
CGCTTCGGTG GGCGCTTCAG CATGATTGGC AACCTGGCGC ATTTGGGCCT GGCGTACCTG
AAGATTGACG GCAGTTACAT CCGCAACATC GATCATGAGC AGCACAAGCG GCTGTTCATC
GAAGCGATCC AGCGTGCGGC GCATAGCATC GACCTGCCGC TGATTGCCGA GCGAGTCGAG
ACGGAAGGGG AGCGGTTGGT GTTGCTGGAG ATGGGAGTAG GCGGGATTCA GGGGCAACTG
GTGGGTGAGC CTGCGCCTTG GCGCTGA
 
Protein sequence
MSLFKQLLLA ICLFLVVAFS GSFMVSLESS RSQYVNQLRS HAQDAATALA LSLTPNIDDP 
AMVELMVSSI FDSGYYASIK VVDLGSNAVL VERHAEPDPG GVPLWFVRLI GLEAAGGDAI
VSRGWQQAAR VEVISHPMFA IAKLWQSALG SLGWLLLCGA ASAVLGALLL RRQLRPLDYM
VEQSHAIARR EFLSLPELPR TPELRRVVQA MNQMVEKLKA LFTEQAERSE RLRAESYQDS
LTGLSNRRYF EMQLNNRVSN LEDARAGYLL LLRVQGLAGL NARLGGQRTD QLLQAVGEQL
RRTCASYPET NDLISRSRGG EFAVLAPGMV HEEAVHLAQA LEATLQSLHE TGASDIDPVA
CIGLAPFSPG DSPQALLKLA DEALARAENQ PTPGWVCLEQ GVAAVAADSQ HAWHERLDQA
FINGHFELFF QPVIECASSQ RVLHHKVISR LRDGQGEALP AGRFLPWLER FGWMPRLDVL
VLEKVLAHLR GHDQVLALNL SAATLADPKA LQRVFELLGQ NAALGPRLVF EIGEEQLPEQ
AALEQLTRRL HGLGFGLALQ RFGGRFSMIG NLAHLGLAYL KIDGSYIRNI DHEQHKRLFI
EAIQRAAHSI DLPLIAERVE TEGERLVLLE MGVGGIQGQL VGEPAPWR