Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0165 |
Symbol | |
ID | 1043688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 187891 |
End bp | 189837 |
Gene Length | 1947 bp |
Protein Length | 648 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637143543 |
Product | GGDEF domain-containing protein |
Protein accession | NP_742334 |
Protein GI | 26986909 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000075441 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCACTGT TCAAACAATT GCTGTTGGCC ATTTGCCTGT TCCTGGTGGT CGCCTTCAGT GGCAGTTTCA TGGTCAGCCT GGAAAGCTCG CGCAGCCAGT ACGTCAACCA GCTGCGCTCG CACGCCCAGG ATGCGGCCAC CGCACTGGCG CTTTCGCTGA CGCCGAATAT CGACGACCCA GCGATGGTCG AGCTGATGGT CAGCTCGATT TTCGACAGTG GTTACTATGC AAGCATCAAG GTCGTCGACC TGGGTTCCAA CGCCGTGCTG GTGGAGCGTC ACGCCGAGCC AGACCCTGGT GGTGTGCCGC TTTGGTTCGT GCGCCTGATC GGCCTCGAGG CCGCCGGCGG CGATGCAATC GTCAGTCGTG GCTGGCAGCA GGCCGCGCGC GTTGAAGTGA TCAGCCACCC GATGTTCGCC ATTGCCAAGC TTTGGCAAAG CGCCTTGGGC AGCCTGGGTT GGTTGCTGTT GTGCGGTGCG GCCAGTGCCG TGCTCGGTGC TTTGCTGTTG CGCCGCCAGT TGAGGCCGCT GGACTACATG GTAGAGCAAT CTCACGCTAT TGCCCGCCGC GAATTCCTCA GCCTGCCAGA GTTGCCACGC ACGCCGGAGC TACGCCGCGT AGTGCAAGCG ATGAACCAGA TGGTCGAGAA ACTCAAAGCC CTGTTCACCG AGCAGGCCGA GCGCAGTGAG CGGCTGCGTG CGGAGTCCTA CCAGGACAGC CTGACCGGGC TGTCGAACCG CCGCTATTTT GAAATGCAGC TGAACAATCG GGTAAGCAAC CTGGAAGACG CGCGCGCCGG TTACCTGCTG TTGCTGCGGG TTCAGGGCCT GGCTGGCCTG AACGCCCGCC TTGGCGGCCA GCGTACCGAC CAGTTGTTGC AAGCGGTAGG TGAACAGCTG CGTCGTACTT GTGCCAGCTA CCCGGAAACC AACGACCTCA TTTCCCGCAG CCGCGGCGGC GAGTTTGCAG TGCTGGCACC GGGCATGGTG CATGAGGAGG CAGTACACCT TGCCCAGGCT CTGGAGGCAA CGTTGCAGAG CCTGCACGAA ACGGGGGCCA GTGATATCGA CCCGGTGGCT TGTATAGGCC TGGCGCCATT CAGCCCTGGT GATTCACCCC AGGCATTGCT GAAGCTGGCC GACGAGGCTC TGGCCCGCGC TGAGAACCAG CCAACGCCGG GCTGGGTATG CCTTGAGCAA GGTGTTGCTG CGGTTGCTGC GGATAGTCAG CATGCCTGGC ACGAACGGCT CGACCAAGCG TTCATCAATG GGCATTTCGA GTTGTTCTTC CAGCCAGTGA TAGAGTGCGC TTCCTCGCAA CGGGTACTGC ACCACAAAGT TATTTCGCGT TTGCGCGATG GCCAGGGCGA GGCCTTGCCG GCGGGCCGCT TCCTGCCTTG GCTGGAGCGC TTCGGCTGGA TGCCGCGGCT GGATGTGCTG GTGCTGGAGA AAGTGTTGGC GCACCTGCGA GGGCATGACC AAGTGCTGGC GTTGAACCTG TCCGCCGCCA CCCTGGCCGA CCCCAAGGCC CTTCAGCGCG TTTTCGAGCT GCTGGGCCAG AATGCGGCGC TCGGTCCGCG GCTGGTTTTT GAAATTGGCG AGGAGCAGTT GCCTGAGCAG GCAGCGTTGG AGCAACTCAC CCGGCGCCTG CATGGGCTTG GCTTCGGGTT GGCTTTGCAA CGCTTCGGTG GGCGCTTCAG CATGATTGGC AACCTGGCGC ATTTGGGCCT GGCGTACCTG AAGATTGACG GCAGTTACAT CCGCAACATC GATCATGAGC AGCACAAGCG GCTGTTCATC GAAGCGATCC AGCGTGCGGC GCATAGCATC GACCTGCCGC TGATTGCCGA GCGAGTCGAG ACGGAAGGGG AGCGGTTGGT GTTGCTGGAG ATGGGAGTAG GCGGGATTCA GGGGCAACTG GTGGGTGAGC CTGCGCCTTG GCGCTGA
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Protein sequence | MSLFKQLLLA ICLFLVVAFS GSFMVSLESS RSQYVNQLRS HAQDAATALA LSLTPNIDDP AMVELMVSSI FDSGYYASIK VVDLGSNAVL VERHAEPDPG GVPLWFVRLI GLEAAGGDAI VSRGWQQAAR VEVISHPMFA IAKLWQSALG SLGWLLLCGA ASAVLGALLL RRQLRPLDYM VEQSHAIARR EFLSLPELPR TPELRRVVQA MNQMVEKLKA LFTEQAERSE RLRAESYQDS LTGLSNRRYF EMQLNNRVSN LEDARAGYLL LLRVQGLAGL NARLGGQRTD QLLQAVGEQL RRTCASYPET NDLISRSRGG EFAVLAPGMV HEEAVHLAQA LEATLQSLHE TGASDIDPVA CIGLAPFSPG DSPQALLKLA DEALARAENQ PTPGWVCLEQ GVAAVAADSQ HAWHERLDQA FINGHFELFF QPVIECASSQ RVLHHKVISR LRDGQGEALP AGRFLPWLER FGWMPRLDVL VLEKVLAHLR GHDQVLALNL SAATLADPKA LQRVFELLGQ NAALGPRLVF EIGEEQLPEQ AALEQLTRRL HGLGFGLALQ RFGGRFSMIG NLAHLGLAYL KIDGSYIRNI DHEQHKRLFI EAIQRAAHSI DLPLIAERVE TEGERLVLLE MGVGGIQGQL VGEPAPWR
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