| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0157 |
|---|
| Symbol | |
|---|
| ID | 1043670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 167324 |
|---|
| End bp | 168241 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637143528 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | NP_742326 |
|---|
| Protein GI | 26986901 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000802537 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGTA AGATCCCCAG TACCGCCGCC CTGATTTGCT TCGAGGCGGC AGCCCGTAAC
GAGAGCTTTA CCAAGGCTGC CCAGGAACTC GCGCTGACCC AGGGTGCCGT CTGTCGGCAG
ATCGGTGGCC TGGAAGCGTT CCTTAATGTG GAACTGTTCC GTCGCTCGCG CCGCGGCGTA
AGGCTGACCG AAGCCGGCCT GTCCTACAGT CGCCAGGTGG CGGCCCAACT GGACGCTGTG
GAGCGCGATA CCTTGTCGGT AATGCGCCAG CAAGGCGCCA ATGTGATCGA GCTGGCGGTA
GTTCCGACGT TTGGCACTCA ATGGCTGCTA CCACGGCTCA AGGACTTCCA GCAGCGCCAC
CCGGAGGTCA CAGTCAACCT CACCAACCGC ACCCGGCCAT TCCTGTTTGC CGACACTACC
TTCGATGCCG CCATCTATTT TGGTGATGCG GACTGGTCAG GCACCCAGTC GCACCAACTG
ATGGGTGAAA ACCCGGTACC TGTGTGCAGC CCGGCGCTGC TGAACGGCCA AGGCATGCTC
GAGGCACGCC ACATCGCGCA GCTACCACTG CTGCAACAGA GCACACGCCC GTATGCCTGG
CGGCAATGGT TCGGCAGTGT GGGCATGAAT GTGGAGCGCG ACATGACAGG CCCGCGCTAT
GAACTATTCT CGATGCTCGC CCAGGCGGCC ATGCACGATA TGGGCATTGC CCTGATACCA
CCGTTCCTGA TCCAGCGAGA GTTGGAGGAG GGAAGGCTGG TGGTCGCTAA CAGGCATGCC
CTGAGTAGCG ACAAGGCCTA CTATCTGATG ATTCCAGAGC GCAAGGTGGA GTCGGCGTCG
CTACGCGCCT TTCGCGACTG GCTGGTAAGC CAGGCTCAGG CCTACATAAA TAGCTCAGGG
ACAAACGCGG CAAATTGA
|
|---|
| Protein sequence | MRRKIPSTAA LICFEAAARN ESFTKAAQEL ALTQGAVCRQ IGGLEAFLNV ELFRRSRRGV
RLTEAGLSYS RQVAAQLDAV ERDTLSVMRQ QGANVIELAV VPTFGTQWLL PRLKDFQQRH
PEVTVNLTNR TRPFLFADTT FDAAIYFGDA DWSGTQSHQL MGENPVPVCS PALLNGQGML
EARHIAQLPL LQQSTRPYAW RQWFGSVGMN VERDMTGPRY ELFSMLAQAA MHDMGIALIP
PFLIQRELEE GRLVVANRHA LSSDKAYYLM IPERKVESAS LRAFRDWLVS QAQAYINSSG
TNAAN
|
|---|
| |