Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0068 |
Symbol | def |
ID | 1043549 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 78533 |
End bp | 79039 |
Gene Length | 507 bp |
Protein Length | 168 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637143440 |
Product | peptide deformylase |
Protein accession | NP_742238 |
Protein GI | 26986813 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00204301 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000040176 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGCCATCT TGAACATTCT CGAATTCCCG GACCCGCGCC TGCGCACCCT CGCCAAACCG GTGACGGAGT TCGACGACGC CCTGCGTCAG CTGATCGACG ACATGTTTGA AACCATGTAC GAAGCCCCTG GCATCGGCCT GGCCGCTACC CAGGTGAACG TGCACAAGCA GGTTGTGGTC ATGGACCTCA GCGAAGACCG CAGCGAACCG CGCGTCTTCA TCAACCCGTC GGTCGAAGAG CTCACCCATG ACATGGGCCA GTACCAGGAG GGCTGCCTTT CGGTACCGGG CTTCTACGAG AACGTCGACC GTCCGCTGCG TGTCCGGGTC AAGGCCCAGG ACCGCGACGG CAAGCCTTTC GAACTGGAAT GCGAAGGCCT GCTGGCGGTG TGCGTACAGC ACGAATTCGA TCACCTCAAC GGCAAGCTGT TCGTCGACTA CCTGTCGCAG CTCAAGCGCG ACCGGATCAA GAAGAAGCTG GAAAAGCAGC ATCGCCAGCA AGCCTGA
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Protein sequence | MAILNILEFP DPRLRTLAKP VTEFDDALRQ LIDDMFETMY EAPGIGLAAT QVNVHKQVVV MDLSEDRSEP RVFINPSVEE LTHDMGQYQE GCLSVPGFYE NVDRPLRVRV KAQDRDGKPF ELECEGLLAV CVQHEFDHLN GKLFVDYLSQ LKRDRIKKKL EKQHRQQA
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