Gene PP_0068 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0068 
Symboldef 
ID1043549 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp78533 
End bp79039 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content61% 
IMG OID637143440 
Productpeptide deformylase 
Protein accessionNP_742238 
Protein GI26986813 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0242] N-formylmethionyl-tRNA deformylase 
TIGRFAM ID[TIGR00079] peptide deformylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00204301 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000040176 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCCATCT TGAACATTCT CGAATTCCCG GACCCGCGCC TGCGCACCCT CGCCAAACCG 
GTGACGGAGT TCGACGACGC CCTGCGTCAG CTGATCGACG ACATGTTTGA AACCATGTAC
GAAGCCCCTG GCATCGGCCT GGCCGCTACC CAGGTGAACG TGCACAAGCA GGTTGTGGTC
ATGGACCTCA GCGAAGACCG CAGCGAACCG CGCGTCTTCA TCAACCCGTC GGTCGAAGAG
CTCACCCATG ACATGGGCCA GTACCAGGAG GGCTGCCTTT CGGTACCGGG CTTCTACGAG
AACGTCGACC GTCCGCTGCG TGTCCGGGTC AAGGCCCAGG ACCGCGACGG CAAGCCTTTC
GAACTGGAAT GCGAAGGCCT GCTGGCGGTG TGCGTACAGC ACGAATTCGA TCACCTCAAC
GGCAAGCTGT TCGTCGACTA CCTGTCGCAG CTCAAGCGCG ACCGGATCAA GAAGAAGCTG
GAAAAGCAGC ATCGCCAGCA AGCCTGA
 
Protein sequence
MAILNILEFP DPRLRTLAKP VTEFDDALRQ LIDDMFETMY EAPGIGLAAT QVNVHKQVVV 
MDLSEDRSEP RVFINPSVEE LTHDMGQYQE GCLSVPGFYE NVDRPLRVRV KAQDRDGKPF
ELECEGLLAV CVQHEFDHLN GKLFVDYLSQ LKRDRIKKKL EKQHRQQA