| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0006 |
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| Symbol | yidC |
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| ID | 1043481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 6471 |
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| End bp | 8153 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637143378 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | NP_742176 |
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| Protein GI | 26986751 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000387778 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATATTA AACGCACGAT CCTGATCGCC GCGCTGGCAG TCGTGTCCTA CGTCATGGTC
CTGAAGTGGA ACGATGACTA CGGCCAGGCT GCCCTGCCGA CTCAGAATAC TGCTGCCAGC
ACTGTTGCTC CGGGCTTGCC CGATGGCGTG CCGGCCGGTA ACAACGGTGC CAGCGCCGAT
GTACCGAGCG CCAACGCCGA ATCGAGCCCT GCCGAACTGG CACCGGTCGC ACTCAGCAAG
GACCTGATCC GAGTCAAGAC CGACGTTCTG GAACTGGCTA TCGATCCGGT CGGTGGTGAC
ATCGTCCAGC TGAACCTGCC GAAGTACCCA CGCCGTCAAG ACCACCCGAA CATTCCATTC
CAGTTGTTCG ACAACGGTGG TGAGCGTGTT TACCTGGCAC AAAGCGGTCT GACCGGTACC
GACGGCCCGG ATGCCCGCGC CAGCGGCCGT CCCCTGTATG CCGCCGAACA GAAGAGCTAC
CAGCTGGCCG ATGGCCAGGA ACAACTGGTG GTAGACCTGA AGTTCAGTGA CAACGGTGTC
AACTACATCA AGCGTTTCAG CTTCAAGCGC GGTGAGTACG ACCTGAATGT CAGCTACCTG
ATCGACAACC AGAGCGGCCA GGCCTGGAAC GGCAACATGT TTGCCCAGCT CAAGCGTGAT
GCCAGCGGCG ATCCGTCCTC CAGTACTGCC ACCGGCACCG CGACCTACCT GGGTGCTGCC
CTGTGGACAG CTTCTGAGCC TTACAAAAAG GTCTCGATGA AGGACATCGA CAAAGGTAGT
TTGAAAGAAA ATGTGTCCGG CGGCTGGGTT GCCTGGCTGC AGCACTACTT CGTGACCGCC
TGGATTCCGG CCAAGTCGGA CAACAACGTT GTCCAGACCC GCAAGGATAG CCAGGGCAAC
TACATCATCG GCTACACCGG CCCGGTTATC AGCGTACCGG CTGGCGGCAA GGTCGAAACC
AGTGCCCTGC TGTACGCCGG CCCGAAGATC CAGTCCAAGC TGAAAGAGTT GTCCCCAGGC
CTGGAATTGA CCGTCGACTA CGGCTTCCTG TGGTTCATCG CCCAGCCGAT CTTCTGGCTG
CTGCAACATA TCCACAGCCT GCTGGGTAAC TGGGGCTGGT CGATCATCGT GCTGACCATG
TTGATCAAAG GCCTGTTCTT CCCGCTGTCG GCTGCCAGCT ACCGCTCCAT GGCGCGTATG
CGTGCCGTTG CACCTAAGCT CGCCGCACTC AAGGAACGCT TCGGTGACGA TCGCCAGAAG
ATGTCCCAGG CGATGATGGA GCTTTACAAG AAAGAGAAGA TCAACCCACT GGGCGGCTGC
CTGCCGATCC TGGTCCAGAT GCCGGTATTC CTGGCCCTGT ACTGGGTATT GCTGGAAAGC
GTGGAAATGC GCCAGGCCCC GTGGATCCTG TGGATTACCG ACCTGTCGAT CAAGGATCCG
TTCTTCATCC TGCCGATCAT CATGGGCGCC ACCATGTTCA TCCAGCAGCG CCTGAACCCG
ACTCCGCCGG ATCCGATGCA GGCCAAGGTG ATGAAAATGA TGCCAATCAT CTTCACCTTC
TTCTTCCTGT GGTTCCCTGC CGGTCTGGTG CTGTACTGGG TTGTGAACAA CTGCCTGTCG
ATTTCGCAGC AGTGGTACAT CACTCGCCGT ATCGAAGCAG CTACCAAAAA AGCTGCTGCT
TGA
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| Protein sequence | MDIKRTILIA ALAVVSYVMV LKWNDDYGQA ALPTQNTAAS TVAPGLPDGV PAGNNGASAD
VPSANAESSP AELAPVALSK DLIRVKTDVL ELAIDPVGGD IVQLNLPKYP RRQDHPNIPF
QLFDNGGERV YLAQSGLTGT DGPDARASGR PLYAAEQKSY QLADGQEQLV VDLKFSDNGV
NYIKRFSFKR GEYDLNVSYL IDNQSGQAWN GNMFAQLKRD ASGDPSSSTA TGTATYLGAA
LWTASEPYKK VSMKDIDKGS LKENVSGGWV AWLQHYFVTA WIPAKSDNNV VQTRKDSQGN
YIIGYTGPVI SVPAGGKVET SALLYAGPKI QSKLKELSPG LELTVDYGFL WFIAQPIFWL
LQHIHSLLGN WGWSIIVLTM LIKGLFFPLS AASYRSMARM RAVAPKLAAL KERFGDDRQK
MSQAMMELYK KEKINPLGGC LPILVQMPVF LALYWVLLES VEMRQAPWIL WITDLSIKDP
FFILPIIMGA TMFIQQRLNP TPPDPMQAKV MKMMPIIFTF FFLWFPAGLV LYWVVNNCLS
ISQQWYITRR IEAATKKAAA
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