| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0005 |
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| Symbol | trmE |
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| ID | 1043475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 5012 |
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| End bp | 6382 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637143377 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | NP_742175 |
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| Protein GI | 26986750 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.273487 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00022418 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACACTG TGCGTGAAAC CATCGCCGCC ATCGCCACGG CCCAGGGCCG GGGCGGTGTG
GGAATTGTCA GGTTGTCCGG CCCTCTGGCT GCCAAGGCCG GCCTGTTGAT CACCGGCCGC
ACCCTGACCC CGCGGCATGC CCATTACGGT CCATTCCGCG ACGATGAAGG GCTGGTGCTG
GACGAAGGGA TTGCTCTGTT CTTTCCAGGG CCTAATTCGT TCACTGGCGA GGACGTGCTT
GAACTGCAGG GACACGGTGG CCCTGTGGTC TTGGACATGC TGCTGCAGCG CTGTGTACAA
GTCGGCTGTC GTCTGGCCCG CCCGGGCGAG TTCAGCGAGC GCGCCTTCCT CAACGACAAG
CTCGACCTGG CGCAGGCTGA AGCCATCGCC GACCTGATCG AGGCCAGTTC CAGCCAGGCA
GCGCGCAACG CCCTGCGCTC GCTGCAAGGG GAATTCTCCA GGCGTGTGCA CAGCCTCACC
GAGGCGTTGA TTGCCTTGCG TATTTACGTC GAGGCGGCGA TCGATTTTCC TGAAGAAGAG
ATCGACTTCC TCGCCGATGG CCACGTGCTG TCGATGCTTG ATGCCGTGCG CAGCGAGTTA
TCCACTGTGC AGCGCGAGGC CGGGCAGGGC GCCTTGCTGC GTGACGGCAT GACGGTAGTC
ATTGCCGGCC GGCCGAATGC CGGTAAATCG AGCTTGCTGA ACCAGCTGGC TGGTCGGGAA
GCTGCCATCG TCACTGACAT CGCCGGCACT ACGCGGGATA TCCTGCGCGA ACATATCCAC
ATCGACGGCA TGCCGCTGCA CGTTGTCGAT ACTGCCGGTT TGCGCGATAC CGATGACCAT
GTGGAAAAGA TCGGCGTGGA ACGCGCCCTG AAGGCCATTG GCGAGGCAGA CCGCGTTCTG
CTGGTAGTCG ACTCTACTGC GCCCGAGGCC AGCGACCCGT TCGCTTTGTG GCCTGAGTTT
CTGGCTCAGC GGCCTGACCC GGCCAAGGTC ACGCTGATTC GCAACAAGGC CGACCTGAGT
GGTGAGCGGG TAGCGCTGGA ACAGTGCGAT GACGGCCATG TGACCATTAC CCTGAGCGCC
AAGGGCGACG ACACAGGGCT GCAACTGCTC CGCGACCATC TGAAAGGCTG TATGGGTTAT
GAGCAGACTG CAGAGAGTGG CTTCAGCGCC CGCCGGCGCC ATCTGGATGC CTTGCGCCAG
GCCAGCGAGC ACCTGGAGCA CGGCCGTGCT CAATTGACCT TGGCGGGCGC GGGAGAGCTT
CTGGCTGAGG ACTTACGCCA GGCACAGCAT GCGCTGGGGG AGATCACAGG AGCATTCAGC
TCGGATGACC TGCTTGGGCG GATTTTCTCC AGCTTCTGCA TCGGCAAGTA A
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| Protein sequence | MNTVRETIAA IATAQGRGGV GIVRLSGPLA AKAGLLITGR TLTPRHAHYG PFRDDEGLVL
DEGIALFFPG PNSFTGEDVL ELQGHGGPVV LDMLLQRCVQ VGCRLARPGE FSERAFLNDK
LDLAQAEAIA DLIEASSSQA ARNALRSLQG EFSRRVHSLT EALIALRIYV EAAIDFPEEE
IDFLADGHVL SMLDAVRSEL STVQREAGQG ALLRDGMTVV IAGRPNAGKS SLLNQLAGRE
AAIVTDIAGT TRDILREHIH IDGMPLHVVD TAGLRDTDDH VEKIGVERAL KAIGEADRVL
LVVDSTAPEA SDPFALWPEF LAQRPDPAKV TLIRNKADLS GERVALEQCD DGHVTITLSA
KGDDTGLQLL RDHLKGCMGY EQTAESGFSA RRRHLDALRQ ASEHLEHGRA QLTLAGAGEL
LAEDLRQAQH ALGEITGAFS SDDLLGRIFS SFCIGK
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