Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0005 |
Symbol | trmE |
ID | 1043475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 5012 |
End bp | 6382 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637143377 |
Product | tRNA modification GTPase TrmE |
Protein accession | NP_742175 |
Protein GI | 26986750 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.273487 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00022418 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACACTG TGCGTGAAAC CATCGCCGCC ATCGCCACGG CCCAGGGCCG GGGCGGTGTG GGAATTGTCA GGTTGTCCGG CCCTCTGGCT GCCAAGGCCG GCCTGTTGAT CACCGGCCGC ACCCTGACCC CGCGGCATGC CCATTACGGT CCATTCCGCG ACGATGAAGG GCTGGTGCTG GACGAAGGGA TTGCTCTGTT CTTTCCAGGG CCTAATTCGT TCACTGGCGA GGACGTGCTT GAACTGCAGG GACACGGTGG CCCTGTGGTC TTGGACATGC TGCTGCAGCG CTGTGTACAA GTCGGCTGTC GTCTGGCCCG CCCGGGCGAG TTCAGCGAGC GCGCCTTCCT CAACGACAAG CTCGACCTGG CGCAGGCTGA AGCCATCGCC GACCTGATCG AGGCCAGTTC CAGCCAGGCA GCGCGCAACG CCCTGCGCTC GCTGCAAGGG GAATTCTCCA GGCGTGTGCA CAGCCTCACC GAGGCGTTGA TTGCCTTGCG TATTTACGTC GAGGCGGCGA TCGATTTTCC TGAAGAAGAG ATCGACTTCC TCGCCGATGG CCACGTGCTG TCGATGCTTG ATGCCGTGCG CAGCGAGTTA TCCACTGTGC AGCGCGAGGC CGGGCAGGGC GCCTTGCTGC GTGACGGCAT GACGGTAGTC ATTGCCGGCC GGCCGAATGC CGGTAAATCG AGCTTGCTGA ACCAGCTGGC TGGTCGGGAA GCTGCCATCG TCACTGACAT CGCCGGCACT ACGCGGGATA TCCTGCGCGA ACATATCCAC ATCGACGGCA TGCCGCTGCA CGTTGTCGAT ACTGCCGGTT TGCGCGATAC CGATGACCAT GTGGAAAAGA TCGGCGTGGA ACGCGCCCTG AAGGCCATTG GCGAGGCAGA CCGCGTTCTG CTGGTAGTCG ACTCTACTGC GCCCGAGGCC AGCGACCCGT TCGCTTTGTG GCCTGAGTTT CTGGCTCAGC GGCCTGACCC GGCCAAGGTC ACGCTGATTC GCAACAAGGC CGACCTGAGT GGTGAGCGGG TAGCGCTGGA ACAGTGCGAT GACGGCCATG TGACCATTAC CCTGAGCGCC AAGGGCGACG ACACAGGGCT GCAACTGCTC CGCGACCATC TGAAAGGCTG TATGGGTTAT GAGCAGACTG CAGAGAGTGG CTTCAGCGCC CGCCGGCGCC ATCTGGATGC CTTGCGCCAG GCCAGCGAGC ACCTGGAGCA CGGCCGTGCT CAATTGACCT TGGCGGGCGC GGGAGAGCTT CTGGCTGAGG ACTTACGCCA GGCACAGCAT GCGCTGGGGG AGATCACAGG AGCATTCAGC TCGGATGACC TGCTTGGGCG GATTTTCTCC AGCTTCTGCA TCGGCAAGTA A
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Protein sequence | MNTVRETIAA IATAQGRGGV GIVRLSGPLA AKAGLLITGR TLTPRHAHYG PFRDDEGLVL DEGIALFFPG PNSFTGEDVL ELQGHGGPVV LDMLLQRCVQ VGCRLARPGE FSERAFLNDK LDLAQAEAIA DLIEASSSQA ARNALRSLQG EFSRRVHSLT EALIALRIYV EAAIDFPEEE IDFLADGHVL SMLDAVRSEL STVQREAGQG ALLRDGMTVV IAGRPNAGKS SLLNQLAGRE AAIVTDIAGT TRDILREHIH IDGMPLHVVD TAGLRDTDDH VEKIGVERAL KAIGEADRVL LVVDSTAPEA SDPFALWPEF LAQRPDPAKV TLIRNKADLS GERVALEQCD DGHVTITLSA KGDDTGLQLL RDHLKGCMGY EQTAESGFSA RRRHLDALRQ ASEHLEHGRA QLTLAGAGEL LAEDLRQAQH ALGEITGAFS SDDLLGRIFS SFCIGK
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