| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0001 |
|---|
| Symbol | parB |
|---|
| ID | 1043468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 147 |
|---|
| End bp | 1019 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637143373 |
|---|
| Product | parB-like partition protein |
|---|
| Protein accession | NP_742171 |
|---|
| Protein GI | 26986746 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1475] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR00180] ParB-like partition proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000184934 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTCA AGAAACGGGG TCTCGGACGT GGGTTGGATG CACTGCTCAG TGGTCCTTCC
GTCAGCGCGC TCGAAGAGCA GGCTGTGAAG ATCGACCAGA AAGAACTGCA ACACCTGCCG
GTCGAGCTGG TCCAGCGCGG CAAGTATCAG CCTCGCCGGG ACATGGACCC GGAGGCGCTG
GAAGAGCTTG CGCACTCGAT TCGCAACCAT GGTGTGATGC AACCGATCGT GGTACGCCCG
ATTGGCGACA ACCGATACGA GATCATCGCC GGTGAGCGCC GTTGGCGCGC TACCCAGCAG
GCCGGCCTGG ACACGATCCC GGCCATGGTC CGCGAAGTGC CCGACGAAGC CGCCATCGCC
ATGGCATTGA TCGAGAACAT CCAGCGCGAA GACCTCAACC CACTGGAAGA GGCCATGGCC
CTGCAGCGCC TGCAACAGGA ATTCGAACTC ACCCAGCAGC AGGTGGCTGA CGCTGTGGGC
AAGTCGCGGG TGACTGTGGC CAACCTGCTG CGCCTCATCA CCTTGCCCGA TGCGATCAAG
ACCATGCTCG CCCACGGTGA TCTGGAGATG GGGCACGCCC GTGCATTGCT GGGCCTGGAC
GAAAATCGTC AGGAGGAGGG GGCGCGTCAT GTTGTCGCAC GTGGCCTCAC CGTGCGCCAA
ACCGAGGCAC TGGTCCGTCA GTGGCTCAGC GACAAGCCTG ATCCGGTCGA ACCGAGCAAA
CCTGATCCGG ATATCGCACG CCTTGAACAG CGGCTCGCAG AGCGCCTGGG CTCGGCCGTG
CAGATCCGTC ATGGCAACAA GGGCAAAGGC CAGTTGGTTA TTCGCTACAA CTCGCTTGAC
GAGTTGCAAG GCGTGCTCGC TCACATCCGC TGA
|
|---|
| Protein sequence | MAVKKRGLGR GLDALLSGPS VSALEEQAVK IDQKELQHLP VELVQRGKYQ PRRDMDPEAL
EELAHSIRNH GVMQPIVVRP IGDNRYEIIA GERRWRATQQ AGLDTIPAMV REVPDEAAIA
MALIENIQRE DLNPLEEAMA LQRLQQEFEL TQQQVADAVG KSRVTVANLL RLITLPDAIK
TMLAHGDLEM GHARALLGLD ENRQEEGARH VVARGLTVRQ TEALVRQWLS DKPDPVEPSK
PDPDIARLEQ RLAERLGSAV QIRHGNKGKG QLVIRYNSLD ELQGVLAHIR
|
|---|
| |