Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU3363 |
Symbol | |
ID | 2688233 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | + |
Start bp | 3694820 |
End bp | 3697111 |
Gene Length | 2292 bp |
Protein Length | 763 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637128057 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | NP_954403 |
Protein GI | 39998452 |
COG category | [K] Transcription [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [COG4624] Iron only hydrogenase large subunit, C-terminal domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAGCCGA TAATTACCGA CAAGGAAAAG TGCCGCAAGT GCTACTGCTG CGTCAGGAGC TGCCCGGTCA AGGCAATCAA GGTTGAAAAA CGCTACACCG AAATTATCTT TGACCGCTGC ATCGGCTGCG GCAACTGTCT GAGCAATTGC CCCCAACGGG CAAAGATGGT GGCCGACAAA GTGGGTGTTA CCGAGAGTCT TCTCACCTCG GAAGACAAGG TAATCGCCGT GCTCGGATCA TCATTTCCAG CCTTTTTTCA CAATGTTGCA CCGGGCCAGC TTGTGGCCGG CCTCAAGCGG ATCGGCTTCC GTGAAGTCCA CGAAGGGGCC TACGGTGCTG AACTGATCGC TGACGATTAC GCCCGTATTA CCGGCGATAA TGACCGGACC TACATTTCAT CCCACTGCCC GGCCATCGTT GACCTGATCG AGCGACACTA CCCGAAACTG CTCAGAAACC TGGTGCCCGT CGTTTCTCCC ATGATCGCCA TGGGCCGCTA TCTCAAGGAA GTTCTGGGCC CCAAGACCAA GGTGGTCTAC ATCAGCTCCT GCATTGCCGC AAAGTTCGAA ACCCAGATGA CCGAAACGCG GGGAGCCATC GACATTGTTC TCACCTATCG GGAACTGGAG GGCATCTTCC GCAGCCGGCA GATTTCCCTC CCGGCCCTCG ATGCGCTTCC CTTCGACGGG CTTGCGCCCA CGGTGGGACG ACTTTTCCCC ATCAACGAGG GAACCTTCCG GTCGTTCTCC ATGTCGGCGG ACCCCCTTGA CACTGAAATA GTCTCCGCCT GCGGCGAAGT AAACGTCATG GGCATCATCA GAGACTTGGC TGCAGGCAGG ATCGCCCCCC GCTTTGCCGA TCTGCGCTTC TGCTATGACG GGTGCATCGG CGGTCCCGGC CGCAATAGCG AACTGACCGA ATTCTACCGC CGCAACCTGA TCATTAACCA TTACAAGCAG GACATCCCCT ACGAGACGGC TCCGCACTAT CTCTCCTCCC GTGAGCAGAC CGGCCTGGAC CGCTCTTTTG CCAGCAAGCA CGCGCGCCTC GAGTCGCCAA AAACAAATGA TATCAAGAAA ATACTGCAAG CCACCAGCAA GTACTCGGTC AAGGACGAAC TCAATTGCCG CGCCTGCGGC TATCGCACCT GCCGCGAGTA TGCCGTGGCG GTCTACCAGG GCTTGGCCGA GATCGAGATG TGCCTTCCCT ACAACCTCCA GCAACTGGAA GAGGATCGTG GTCGCCTGAT CCAGAAGTAC GAGCTCGCCC GTCGAGAACT CGACCGCGAG TATACTGACG AGTTCATCGT CGGCAACGAC CGCAAGACCT TGGAAGTACT TGATCTCATC AAGCAAGTGG GGCCGACGCC GACGACGGTT CTGATCCGGG GCGAGTCGGG AACCGGCAAG GAACTCACCG CCCGAGCCAT TCATCGCTTC AGCAAGCGCA ACGATAAGCC CCTGGTGACC GTGAACTGCA CCACTATCAC CGACTCCCTT CTGGAGAGCG AACTCTTCGG ACACAAGCGG GGGGCCTTCA CCGGTGCCAT CGCCGAGAAA AAGGGGCTGT TCGAGGCCGC CGACGGCGGC ACCATTTTCC TGGATGAAAT CGGCGATATC ACGCCGAAAT TGCAGGCAGA GCTCCTGCGT GTCCTCGACA TGGGCGAGGT GCGTCCCGTT GGGGGTACGA CCGCCCGCAA GGTCGACGTA CGCCTCATTG CCGCAACCAA CCGGAACCTC GAAGAAGGAG TACGGGAGGG CTGGTTCCGC GAGGATCTGT ATTATCGCCT CAACGTTTTC ACCATTACCA TGCCGCCTCT GCGCAACCGG GTGGAGTCGA TTCCGATCCT GGCGCACCAC TTCATGGAAA AAGCCAGCAC CAAACTGAAC AAACGGCTCT CAGCCATCGA AGAGCGGGCC GTCATCGCCC TCACCAAGTA CCCTTGGCCC GGCAATATCC GCGAGATGCA GAACGTCATC GAACGGGCTG CGGTTCTTGC CCACGACGAT GTTATCCACC TGGAGAACCT CCCCCTGGCC CTTTCGGAAA ATCTGGCAGG AAGCCCGACC GCCGACCTGG ATATCCGGGC TTCCTTCCGC GCGGAGCGCG AAAGGCATGT GGTCAAGCTC GAGAAGAAGC TGATCCAGCG CTATCTGGCC GAGGCAAACG GCAATGTGAG CCGTGCCGCG CGGCTCGCCA ACATTCCCCG CCGAACCTTT TACCGCCTGC TCGACAAGTA TCGCCTCAAA GACAAAGAGG TGCGGGATAT GCCGCAGGGG GACAGACAAT AG
|
Protein sequence | MEPIITDKEK CRKCYCCVRS CPVKAIKVEK RYTEIIFDRC IGCGNCLSNC PQRAKMVADK VGVTESLLTS EDKVIAVLGS SFPAFFHNVA PGQLVAGLKR IGFREVHEGA YGAELIADDY ARITGDNDRT YISSHCPAIV DLIERHYPKL LRNLVPVVSP MIAMGRYLKE VLGPKTKVVY ISSCIAAKFE TQMTETRGAI DIVLTYRELE GIFRSRQISL PALDALPFDG LAPTVGRLFP INEGTFRSFS MSADPLDTEI VSACGEVNVM GIIRDLAAGR IAPRFADLRF CYDGCIGGPG RNSELTEFYR RNLIINHYKQ DIPYETAPHY LSSREQTGLD RSFASKHARL ESPKTNDIKK ILQATSKYSV KDELNCRACG YRTCREYAVA VYQGLAEIEM CLPYNLQQLE EDRGRLIQKY ELARRELDRE YTDEFIVGND RKTLEVLDLI KQVGPTPTTV LIRGESGTGK ELTARAIHRF SKRNDKPLVT VNCTTITDSL LESELFGHKR GAFTGAIAEK KGLFEAADGG TIFLDEIGDI TPKLQAELLR VLDMGEVRPV GGTTARKVDV RLIAATNRNL EEGVREGWFR EDLYYRLNVF TITMPPLRNR VESIPILAHH FMEKASTKLN KRLSAIEERA VIALTKYPWP GNIREMQNVI ERAAVLAHDD VIHLENLPLA LSENLAGSPT ADLDIRASFR AERERHVVKL EKKLIQRYLA EANGNVSRAA RLANIPRRTF YRLLDKYRLK DKEVRDMPQG DRQ
|
| |