| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU3304 |
|---|
| Symbol | |
|---|
| ID | 2688247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 3627493 |
|---|
| End bp | 3628866 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637127996 |
|---|
| Product | LamB porin family protein, putative |
|---|
| Protein accession | NP_954344 |
|---|
| Protein GI | 39998393 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00991387 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA AGATTTTTGC TGTGGCCGCC GCCGGCGCCC TGACCGCTGC GACGGCAGTT
CCGGCCCTGG CGCTGGAGAA CGAGTTTCAC GGGATGTTCC GGGTTAACGG TTTCATCTCC
AACTTCGCCG ACGGTGCTTC GGGCGCAACC AAAATTACCG CCCAGGACCC CAAAACCAGA
AACTTTCTTG AGCAGCGCGC CCGCCTGCTC TACATGGCCA AGGCCAATGA CGATCTCAAG
CTCATTACCC ACTTCGAGAT CGACTCAACC TGGGGCAAGT CCTCCTACGT AGTCGGAAGA
TCGAACGATG GCGGCGCTCT CGGCGCGGAC AGCGTCAACA TTGAGACCAA AAACGTTTAC
CTCGACTTCA ACATCCCCTC GACCCCGCTG AACGTCAAGG TCGGTATCCA GCCCATCAGC
GACTCGTACA AGGGCGTCTT CATCAATGCC GATGCGGCTG CCGTCCTTGC GGCCGCCAAA
ATGGGCGATG CCACCGTCGC ACTCGGGTTC GCACGTCTCG ACGATGCCGA TACGTTCACC
ATCGGCTCTG CTGCGAACCG CTCTGCCACC ACCCCGGGCA AAGCTACCCG CGACCTCTAC
ATCGTCGACG GCAAATACAA CATCTCCAAA GACCTGAAGG TCGGCGGCTC CTACTATGCC
CTGCTGGCGG ACCAGAATGA CACAACTCTC AACTTCGCTC TCCACACCAT TGGTGTGAAT
GCCGAGTACA AGTTCGATCC CGTGACCATC GACGGCTTCC TGCTCTATCA ACGCGGCCGG
ACCAGCGGCA CCGCCAAGGT CGACTTCGGC GGATGGGCCG CAAACGCCAC CGCCAAGATG
AAAGTCGGCC CCGGCACCCT GAAAACCTCC TTCCTCTACG CCTCCGGAGA GCAAAACGCC
AATCCGGACA ACTCCTCTTA CATGGGCGTG ACCAACGAGA CCTCCGGCGC CAACGGCGAG
CACAGCTTCT ATGAGTCCGA GATGATGATC ATGTTCCGGA ACAAGTACAA CATCGGCGAC
CGCGCTCTTG TGTACAACGT ACAGAACGTC ATCGGCGGAT TCGTCGGCTA CAATGCGAAC
ATTACCTCCA AGGCATTCGC CATCGCCAAC GTAGGCTTTG TTGCCGCCGA CAAAGACAAC
ACCACCTATG GCAATGCGCG CGTAACCGGC GAGGCGGGTC ACAAGAGCAA GTACCTCGGT
ACCGAACTCA ACGCCGAAGT CGGCTACAAG GTGTTTGACA ACCTGACTGC CAGCGTACAG
GGCGCCTACG TGATTCTCGG CGACTACTTC AAGGATACCG CCGGCACGGC GGCAAACCCC
GAAGATCCCC GGAATCCGTA CCTGACCCGC GTCATGCTGA ACTACGCATT CTAA
|
|---|
| Protein sequence | MKKKIFAVAA AGALTAATAV PALALENEFH GMFRVNGFIS NFADGASGAT KITAQDPKTR
NFLEQRARLL YMAKANDDLK LITHFEIDST WGKSSYVVGR SNDGGALGAD SVNIETKNVY
LDFNIPSTPL NVKVGIQPIS DSYKGVFINA DAAAVLAAAK MGDATVALGF ARLDDADTFT
IGSAANRSAT TPGKATRDLY IVDGKYNISK DLKVGGSYYA LLADQNDTTL NFALHTIGVN
AEYKFDPVTI DGFLLYQRGR TSGTAKVDFG GWAANATAKM KVGPGTLKTS FLYASGEQNA
NPDNSSYMGV TNETSGANGE HSFYESEMMI MFRNKYNIGD RALVYNVQNV IGGFVGYNAN
ITSKAFAIAN VGFVAADKDN TTYGNARVTG EAGHKSKYLG TELNAEVGYK VFDNLTASVQ
GAYVILGDYF KDTAGTAANP EDPRNPYLTR VMLNYAF
|
|---|
| |