| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU3172 |
|---|
| Symbol | |
|---|
| ID | 2687696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 3481200 |
|---|
| End bp | 3481685 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637127865 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_954213 |
|---|
| Protein GI | 39998262 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAATG AAGCATCCGT AGCACCGAAG GAACGGGTGA ACATCGTCTA CCGTCCCGCC
GATGGCGAAG GGCGCGAGGA AGTGGAGCTT CCCCTTAAAA TCCTGGTGTT AGGGGACTTT
ACCGGGCAAC CGGACGAGCG GCCCGTGGAG AAGCGGGACC CGGTGCCAGT GGACAAAGAA
AACTTCAGCG AGGTCATGAA GGCCCAGAGA ATCATGCTGA ACATCGCCGT CTCCAACCGG
CTTTACGATG CACCCGACGA GGAGCTGCCG GTGAAGCTGA AAATGGAATC CCTGAGAGAT
TTCGGCCCGG AGGCCATTGT GGAGCAGGTC CCGGAGATGA AACGCCTGTT GGAGTTGCGC
GAGGCACTGC GGGCGCTGAA GGCTCCCCTC TCCAACATTC CGGACTTCCG GAGAAAAATT
CAGGAACTGG TCACTGACGA TGCCGCCCGC GCCAAGCTGC TGGCTGAAAT AGGGATCGAA
GGGTAA
|
|---|
| Protein sequence | MSNEASVAPK ERVNIVYRPA DGEGREEVEL PLKILVLGDF TGQPDERPVE KRDPVPVDKE
NFSEVMKAQR IMLNIAVSNR LYDAPDEELP VKLKMESLRD FGPEAIVEQV PEMKRLLELR
EALRALKAPL SNIPDFRRKI QELVTDDAAR AKLLAEIGIE G
|
|---|
| |