| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU2617 |
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| Symbol | secD |
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| ID | 2686274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sulfurreducens PCA |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002939 |
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| Strand | - |
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| Start bp | 2887086 |
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| End bp | 2888687 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637127307 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | NP_953662 |
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| Protein GI | 39997711 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCAAAG GGCTACTCTG GCGCTTCAGC CTCATTGCAT TATTTATTAC TCTGTCGCTT
CTCTACCTGA CCCCGACCCT GGTGTCGCCG CTGCCGTCCT GGTGGAAGGG ACTCCTTCCC
AAGGACCGGA TACACCTGGG ACTCGACCTG CAGGGCGGGA CGCATTTGGT CATGGAGGTG
GAAACCCAGA AGGCCGTTGA GGGGACCCTG GACCTCATCG CCACCGACCT GGAGGATGCG
CTCTCGGCCA AGACGCTGCG GTACAAGCAG ATCGCCCGTC AGGGGGGCGA CCGGGTCGGC
ATGACTTTTT ACGATCGCGG GACCGCTGAC GAGGCCCAGA AGCTTCTCAA GGACAAGTAC
CCGACCATGA CGCTCGTCCC CCCCTATGAC GAGGGGGGCT TCGTGCACCT GCAGCTCCGG
ATGAACGAGA AGGAGGCCCA GGAGCGCAAG GACCGGGCCG TTGCCCAGGC CCTGGAAACC
ATCCGCAACC GGATTGACCA GTTCGGCGTT TCCGAGCCGG TCATTGCCCG CGAAGGACTC
ACCAACATCG TGGTCCAGCT GCCGGGCATC AGCGACCCGA AGCGGGCCAT CGAGCTCATC
GGCCGCACGG CCCGCCTTGA GTTCAAGCTG GTGGACGAGA CGGTCAATCC GGCCATCGCC
ACGCCGGGAA CCATTCCCGA AGACACGGAA ATCCTGATGG AGAAGCGGAC CGATCCCACC
ACCGGGGCGG TCACCGAGAT TCCGCTGGCG GTGAAGAAGA AGGCAATCAT TACCGGTGAT
CTTCTCACCG ATGCCCAGAT CAGGATCGAT TCCCAGTTCA ACCAGCCCTA CGTGGCCATC
GAGTTCAACT CGACCGGCGC CCGGCTCTTC GACCAAGTGA CCGCCGCCAA CGTGGGCAAG
CGCTTCGCCA TCGTCCTTGA CAACACCATC TACTCGGCCC CGGTCATCCG CGAGCGGATC
TCCGGCGGGA GCGCCCAGAT CTCCGGCTCG TTCACCGAGA AGGAAGCGGC CGACCTGGCC
ATCGTGCTCC GGGCCGGTTC CCTCCCCGCC CCGGTCAAGA TCATCCAGAA CGTGACGGTG
GGTCCGTCCC TGGGTGAAGA CTCCATCAAC AAGGGACTCA TGGCCGGCGC CATCGGCGTC
GCGCTCGTGA TCCTCTTCAT GGGGATCTAC TACAAGCTGT CGGGGATGGT GGCCAATTTC
GGGATGATTC TCAACGTCCT CTTCCTCATG GGGGCTCTGG CCGCCCTGGG GGCGACCCTC
ACCCTGCCCG GCATCGCCGC CATCGTACTG CTGATCGGCA TGTCGGTTGA CGCCAACGTT
CTGATCTTCG AACGGATACG GGAGGAACTG CGCCTTGGCA AAACGCCGAT TGCCGCCCTT
GATTCAGGCT ACGACAAGGC GTTCCTCACC ATCATGGACT CCCACGTGAC CACCCTTATA
ACCGCGGCGG TCCTCTTCCA GTTCGGCACC GGTCCGGTCA AGGGATTTGC CGTGTCGCTC
AGTCTGGGGG TCATTATCAA CCTCTTTACT GCCCTCGTCG GAACCAAGGC GATCTTCGAT
TTCGTCCTGA ACCGTCTGCG GGTCAAGCGT CTGAGCGTCT AG
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| Protein sequence | MSKGLLWRFS LIALFITLSL LYLTPTLVSP LPSWWKGLLP KDRIHLGLDL QGGTHLVMEV
ETQKAVEGTL DLIATDLEDA LSAKTLRYKQ IARQGGDRVG MTFYDRGTAD EAQKLLKDKY
PTMTLVPPYD EGGFVHLQLR MNEKEAQERK DRAVAQALET IRNRIDQFGV SEPVIAREGL
TNIVVQLPGI SDPKRAIELI GRTARLEFKL VDETVNPAIA TPGTIPEDTE ILMEKRTDPT
TGAVTEIPLA VKKKAIITGD LLTDAQIRID SQFNQPYVAI EFNSTGARLF DQVTAANVGK
RFAIVLDNTI YSAPVIRERI SGGSAQISGS FTEKEAADLA IVLRAGSLPA PVKIIQNVTV
GPSLGEDSIN KGLMAGAIGV ALVILFMGIY YKLSGMVANF GMILNVLFLM GALAALGATL
TLPGIAAIVL LIGMSVDANV LIFERIREEL RLGKTPIAAL DSGYDKAFLT IMDSHVTTLI
TAAVLFQFGT GPVKGFAVSL SLGVIINLFT ALVGTKAIFD FVLNRLRVKR LSV
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