| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU2476 |
|---|
| Symbol | |
|---|
| ID | 2687860 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 2715279 |
|---|
| End bp | 2716979 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637127166 |
|---|
| Product | TPR domain-containing protein |
|---|
| Protein accession | NP_953522 |
|---|
| Protein GI | 39997571 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG0457] FOG: TPR repeat
[COG2264] Ribosomal protein L11 methylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.834275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA AGAAGGCGCA TGCCGCGGGA GCAGGGCCGA AGCTGTCCGT GACCAATCCC
CCCCGCACTT TTTTTGAAGA CACGCTGGCG CTGTTCAATT CGAGACGCTT TGACCTGCTG
GACCAGAAGA TCAATGAGGC CGTGAACAAA TGGCCCAACC ACGCCGTGGT CTGGAAGGCG
ATCGGGGTCA TCATGCTCAT GGAGGGACGG TTCAAGGAAG CAATCGAACC GTTGACCACG
GCGGCGAACC TGGCGCAGGG CGATGCGCAG CTGCACCACA ACCTCGGGGT GGCATACCTG
CGGCTCGAGC AGTATGAAAA AGCCGTACCC TGGCTGCAGC GGGCCACCAG CCTCAAGCCG
GATTATGCCC AGGCCTTCGC CAACCTGGGT ATCGCCCAGG CAGAGATCGG GCTTCTCCAG
GCGGCGGAAA GCAACTATCG CACTGCGCTG AAAATCAACA AGGATTTTCC CGAGGCGCTC
AACAATCTCG GCAATGTGCT GAATGATCAG AAACGGTATG GGGAGGCAGA GGAGTGCTTC
CGGAGGGCTC TCGTCCTCAA GCCGGATTTT GCCGAAGCCC TCAATAACCT GGGCACGAGC
CTGAAGGGGC TGAACCGGCT GGAGGAGGCA GAAACCACCT ACCGGAAGTC CCTGTCGCTG
ATGCCGGATT ACACCCGCGC CCACATCGGC CTGGGCCACA CCCTGTTCAA GCTCCGCCAG
CCGGACAAGG CAGCGGCGAG TTTCCGCCGG GCAATCGAGC TTTCCCCCTA CGAACTGGAA
GCCCATGACG GCTTGAGCAT GACCCTCGGC GACACGGTTC CCCTGTGGCA TCTGCCCATG
ATGAACGACA AGCCCAGGAA CGATGCCTAT TTCAATGCCC TGCAGGCCGC GGTCACCCCG
GAGACGCGCG TTCTGGAAAT CGGGACCGGA TCGGGCCTTC TGTCCATGAT GTCGGCCCGC
CTGGGCGCAC GGCACGTGAC AACCTGCGAG GTGGTCACGG CAATTGCCGA GACTGCCGCG
TCCATCGTGA AAGACAACGG ATTCGCGGAC CAGGTCACCG TGATTCCGAA ACTGTCCACC
ACCCTGGAGG TCGGCGTCGA CCTGGAAGAG CGGGCCGATC TGCTCGTCTC GGAAATCCTG
TCGAGCGAAT TTCTCGGCGA AGGCGTTCTG AGCAGCATCG AAGACGCAAA ACGGCGGCTG
CTCAAGCCGG GAGCCCGGAT CATCCCCGCC CGGGGCTCGG TCCGGATTGC CCTGTTCGGC
GGACGGGACA TCGAAATGAA CGTCCGGGTC GACGAGGTCT ACGGCTTCGA CCTGTCGAGG
TTCAACGACA TCGTGCCCCC GAAGCAGTAT GTCGGCAGGA ACGATCTCAA CATCGAACTG
CTGAGCGACG GCATCGGGGC CATTCATTTC GACTTCATGG GCACGGATCA CTTCCCCACC
AGCAGAAGCT ACGGCATAGA CGTGCCGATC ACCAGGGCCG GCAGGTGCTG CGGCGTCATC
CAGTGGATAC GCCTTGAAAT GGACGATACC TTCGTCTTTG AGAACCATCC GGCAGAGAGG
AATGTGGCAT CCGGCTGGCA GCACTGCGTC TATCTCTTCA AAACCCCCGT CGACGTGCAG
CCCGGCCAGG TCGCGCAGAT CATCGCCTCC CACGACATCA GGACCTGCTG GTTCTTTCTG
AAGAAAATCG TGACCCCATG A
|
|---|
| Protein sequence | MKKKKAHAAG AGPKLSVTNP PRTFFEDTLA LFNSRRFDLL DQKINEAVNK WPNHAVVWKA
IGVIMLMEGR FKEAIEPLTT AANLAQGDAQ LHHNLGVAYL RLEQYEKAVP WLQRATSLKP
DYAQAFANLG IAQAEIGLLQ AAESNYRTAL KINKDFPEAL NNLGNVLNDQ KRYGEAEECF
RRALVLKPDF AEALNNLGTS LKGLNRLEEA ETTYRKSLSL MPDYTRAHIG LGHTLFKLRQ
PDKAAASFRR AIELSPYELE AHDGLSMTLG DTVPLWHLPM MNDKPRNDAY FNALQAAVTP
ETRVLEIGTG SGLLSMMSAR LGARHVTTCE VVTAIAETAA SIVKDNGFAD QVTVIPKLST
TLEVGVDLEE RADLLVSEIL SSEFLGEGVL SSIEDAKRRL LKPGARIIPA RGSVRIALFG
GRDIEMNVRV DEVYGFDLSR FNDIVPPKQY VGRNDLNIEL LSDGIGAIHF DFMGTDHFPT
SRSYGIDVPI TRAGRCCGVI QWIRLEMDDT FVFENHPAER NVASGWQHCV YLFKTPVDVQ
PGQVAQIIAS HDIRTCWFFL KKIVTP
|
|---|
| |