| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1928 |
|---|
| Symbol | |
|---|
| ID | 2685383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 2107340 |
|---|
| End bp | 2109721 |
|---|
| Gene Length | 2382 bp |
|---|
| Protein Length | 793 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637126619 |
|---|
| Product | sensor histidine kinase/response regulator |
|---|
| Protein accession | NP_952977 |
|---|
| Protein GI | 39997026 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCT GCGTGACGGT GCTGATACTG GCGTTTGCCG GGTTCGTGGT GCGGGACCTG
ACGATGGAGC CGCCAGAACT TCTGAGGCGG TTGGAGATCA TTGCAGGTGT TGTCGGTGAC
AAAAGTATGA CCAGCATCGT TTTTAACGAT GTCCGGGCTG CCTCGGAGAT GCTGGATGTC
CTCAAGACGG ATCCCCACAT CATCGTTGGG CGCATCTACC TCAAGGATGG CTCGATTTTT
GCGCATTACC GACGGAAGGG GTCACTGGCA TCGCCTGCCG CAAACTCGTC GGCGGATGAC
GCAACCACCT GGATCGAGTA TCGGCAACAG ATGGTGGAGA AGATGGGAGA TTCCCTTCCC
AGTCATCATT GGCATGGCGA CCACCTCGAT ATGTTCAGGC CGATAATACT AGACGGGGAG
GTCATCGGCA CCGTCTATCT GCGGGGCGAT TACCGGGAGA TATACTCGCG TTTGCGCTGG
TATGCGGTAA GCGGAGGAGT GCTGCTGCTT ATGCTCTCCG CCTTTGCCTA CGTTCTGTCT
TCAAAGCTGC AGCGACGGGT TTCTGCGCCG ATTGCCGAAT TGCTTGAGGT TACGCGGCGT
GTTGCTGAGG AGCACAACTA CTCGGTACGG GCCGCGGGGG GAGGGGTCGA CGAGATCGGC
GAACTCGTGT CCGGCTTCAA TAGGATGCTT CAGATCATCG AAGAAAGTGA CGCGAATCTG
AAGCGGAACC GCGAAGACCT GGGGGAGGAA GTCGCCCGCC GCACCGAAGA TCTGTCGCGG
ACCAACGAGG AACTGGAGCG GGCTGTTGCC GACCTGAGCA AGGCGAAAGA AGCCGCAGAT
TCCGCCAGTC AGTCAAAATC GCGGTTCCTG GCCAATGTGA GTCACGAGAT CCGCACGCCC
ATGAACGGCG TCCTCGGCAT GGTCAGTCTC CTTCTCGAAA CCGACCTTCA AGCCAAACAG
CGCGAGTATG CTGAGATCAT CCGGTCATCC GGTGAACTGC TCATGCAGGT CATTAACGAT
CTGCTCGATT TTTCCCGTAT TGAGTCGGGA AAACTGAAGA TGGAGCAGCT GCCCTTTGCG
GCGCGCCGTG TCATTGAAGA AATGGCCACC ATTTATGGTG AGCGAGCCCG CCAGAAGGGG
GTCTTCCTTG AATACTCCAT GGCAGGAGAG GTGCCCGACC GCCTTCTGGG CGACCGCCAC
CGGCTCCGTC AGGTGTTGGG GAATCTTCTC GACAATGCCG TGAAATTCAC CCTCAAGGGG
ACAATCACAC TGACCGTTCG CGGGAGCGTG GAGGGTGGAG TCTGCCGACT CAGCTGCATC
GTAAGCGATA CGGGGATCGG CATTCCCCAG GATATGCTGC CCCGTTTGTT CCACCCGTTC
ACCCAGGCCG ACGACTCCAA TACCCGCCGT TTCGGAGGCA CGGGGCTGGG GCTCGCCATT
GTCCGCCATC TTGTGGAGCT CATGGGGGGC ACGGTCAGTT GCGACAGTGA GCCGGGGTGC
GGATCCGTTT TCCGGTTCAC GGTCGCCCTG TCGGTGGTGC CGGATACGGG TGAGCCGGAA
CCGGAACCGT CCCATGAAGC TGCTGGGTCT TTTCCTTCTC GCCTATTGCT GGCAGAGGAC
AATGCCGTCA ACCGAATGGT GTTGCAGGAG ATGCTCCGAA GCCTCGGGGC GGATGTCATG
GTGGTCTCTG ACGGAGCCGA AGCCGTGGCT GCCGTCTCGG CTGAGCGGTT CGACATGGTG
TTCATGGATT GCCAGATGAC CGGTATGAAC GGGATTGTCG CCACAGCCGA AATTCGCCGC
ATGGAGCGTA CCGGACAGCT CACAGGCCGA ACTCACATCA TCGCCCTTAC CGGAAGGGTG
GAGGTGGGCG ACCGGGAGGC CTGTCTGGCG GCGGGAATGG ACGATTACCT CATCAAGCCG
GTTATGCGCC ACGATCTGGT GATGGTGCTC CGGCGCTGGC TGTCCCCGCA TGACGAGACG
ATGCCATCCG CGGCATACGA CAAGGCTCCC GGGGGAGTGA GTGAAGAGGC CGAATGTCTT
CTCGACCGGG ATATTCTGGA TGGCATTCGT GCCTTGGAGG CGGGCGGGTC CGAGGGGCTC
CTCGACCGTG TCATTGATAT TTTTATTTCC GATTCGCCAC GGCACCTGCG TGATATGAGG
GAGGCCCTGG CGCGGGAGAA CCTGCCTGCC GCCCGACGGG CTGCACATAC TCTCAAATCC
GGGTGCCTCA ATCTGGGAGC CGTTGCCCTC GCAGCCTTAT GCGGGGAGAT GGAGCGACTC
GGCGAAGGAG AAGACGTCTT GCCGTTGCGG CTGCTCTCAC GTATGGAGTC GGAATTCATA
AGGGTGTGCG CCGCGCTGGA GCGCGAGCGC ACCGGGGTGT AA
|
|---|
| Protein sequence | MATCVTVLIL AFAGFVVRDL TMEPPELLRR LEIIAGVVGD KSMTSIVFND VRAASEMLDV
LKTDPHIIVG RIYLKDGSIF AHYRRKGSLA SPAANSSADD ATTWIEYRQQ MVEKMGDSLP
SHHWHGDHLD MFRPIILDGE VIGTVYLRGD YREIYSRLRW YAVSGGVLLL MLSAFAYVLS
SKLQRRVSAP IAELLEVTRR VAEEHNYSVR AAGGGVDEIG ELVSGFNRML QIIEESDANL
KRNREDLGEE VARRTEDLSR TNEELERAVA DLSKAKEAAD SASQSKSRFL ANVSHEIRTP
MNGVLGMVSL LLETDLQAKQ REYAEIIRSS GELLMQVIND LLDFSRIESG KLKMEQLPFA
ARRVIEEMAT IYGERARQKG VFLEYSMAGE VPDRLLGDRH RLRQVLGNLL DNAVKFTLKG
TITLTVRGSV EGGVCRLSCI VSDTGIGIPQ DMLPRLFHPF TQADDSNTRR FGGTGLGLAI
VRHLVELMGG TVSCDSEPGC GSVFRFTVAL SVVPDTGEPE PEPSHEAAGS FPSRLLLAED
NAVNRMVLQE MLRSLGADVM VVSDGAEAVA AVSAERFDMV FMDCQMTGMN GIVATAEIRR
MERTGQLTGR THIIALTGRV EVGDREACLA AGMDDYLIKP VMRHDLVMVL RRWLSPHDET
MPSAAYDKAP GGVSEEAECL LDRDILDGIR ALEAGGSEGL LDRVIDIFIS DSPRHLRDMR
EALARENLPA ARRAAHTLKS GCLNLGAVAL AALCGEMERL GEGEDVLPLR LLSRMESEFI
RVCAALERER TGV
|
|---|
| |