Gene GSU1870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGSU1870 
Symbol 
ID2686788 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sulfurreducens PCA 
KingdomBacteria 
Replicon accessionNC_002939 
Strand- 
Start bp2046614 
End bp2047642 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content60% 
IMG OID637126561 
ProductGGDEF domain-containing protein 
Protein accessionNP_952919 
Protein GI39996968 
COG category[T] Signal transduction mechanisms 
COG ID[COG3605] Signal transduction protein containing GAF and PtsI domains
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCGAAG CCGAGGTGGT CGCGCTGAAG GACCTGATCG AGGTGGCCGG TGCCGTGGTC 
TCCACCCTTG ACCTCGATAC GGTGCTCAGG CACATCCTGA CGAGCGCCAT GCGCTTCGCC 
GAAACACCGG CCGGCAGCAT CGCCCTCTAC GACGGGTACC GCAACGATCT TACCCTCCAT 
GCCCACGAAG GCTTGACCCC GGAGTTCGTC AAAACCGAGC GCTGGAGCGT TCAGCCCGGC 
GGACTCACGG AGCAGGTGCT GACCCGTGGC GAGATTCTCT TTGTCAACGA CACGGCCGAC 
ACGAGCTTCT TCCACAATCC CACCGCCCTC AACGAGGGGA TCCGTTCCCT CATCTGCGTT 
CCTCTCATGA TGCAGAACCG CATTGTCGGC ATCCTCTACC TGGACGATTT CGTCCCCCGG 
GACTTCGACA AGGAACGGAT GAAACTCCTG TCAGTACTCG CATCCTTCGC GGCGATGGCC 
ATCGACAACG CCCAGCTCCA CGCGCGGACG CGACTGATGG CCATCACCGA TTCCCTTACG 
GGATTGTATA ACCATAGATA TTTCCAGCAG ATTTTTAGTC GTGAGCTGAA CCGGGCCAAG 
CGCTATGAAA AGCCTCTTGC TATCATCATG CTCGATGTGG ACGACTTTAA GAGGTTCAAC 
GACACCTACG GCCATCCCCA CGGAGATAAG GTGCTGGCAG CCATGGGCGA CTTCCTCGGC 
GAGGCCCTGC GGAGCTCGGA TTTCGCCTTC CGGTACGGAG GGGAGGAGTT CATTGTCCTG 
CTGCCCGAAA CGGAATTCGA CAGTGCCCTC CAGGTTGCGG AGCGGCTGCG CGAACTGGTG 
GAGCGACGAA GCCTCGACGT GCTCAAGGGG CTAGCTCCAC AGGGCGTTAC GGTCAGCGTC 
GGCGTTGCCT CGTTTCCCCG CGACGGGGAA AGCCGTGGGG ATATGCTCAA GCGGGTCGAC 
GATCTCCTCT ACCGGGCAAA GGAGTTCGGC AAGAACCGCG TGTACAGCAG AAGAGAGGAT 
GAGCCATGA
 
Protein sequence
MLEAEVVALK DLIEVAGAVV STLDLDTVLR HILTSAMRFA ETPAGSIALY DGYRNDLTLH 
AHEGLTPEFV KTERWSVQPG GLTEQVLTRG EILFVNDTAD TSFFHNPTAL NEGIRSLICV 
PLMMQNRIVG ILYLDDFVPR DFDKERMKLL SVLASFAAMA IDNAQLHART RLMAITDSLT 
GLYNHRYFQQ IFSRELNRAK RYEKPLAIIM LDVDDFKRFN DTYGHPHGDK VLAAMGDFLG 
EALRSSDFAF RYGGEEFIVL LPETEFDSAL QVAERLRELV ERRSLDVLKG LAPQGVTVSV 
GVASFPRDGE SRGDMLKRVD DLLYRAKEFG KNRVYSRRED EP