| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1644 |
|---|
| Symbol | |
|---|
| ID | 2687346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 1802943 |
|---|
| End bp | 1804622 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637126325 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | NP_952695 |
|---|
| Protein GI | 39996744 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG ACAGCACGAA AATCATCTAC ACCATGATGA GGGTGTCCAA GTACTACGAC
AAGAAGCCCG TCATCAAGGA CATCTCCCTT TCCTATTTTT ATGGGGCAAA GATCGGTGTC
CTGGGTCTCA ACGGCTCGGG CAAGTCGACG CTGCTGCGGA TCATGGCCGG GGTCGACAAA
GACTTCAACG GTCAAGCTGT GCTTTCGCCC GGTTACACCG TCGGCTACCT TGAGCAGGAA
CCCAAGCTCG ACGAGTCGAA AACCGTCCGT GAAATCGTCG AGGAAGGGTG CCAGGAAACC
GTCAATCTCC TGAACGAATT CAACGAAATC ACCGCCGCCT TTGCCGATCC CGACGCTGAT
ATGGACAAGC TGCTTGAGCG CCAGGCAGAG GTGCAGGAAA AGCTCGATCA CCTGGATGCC
TGGGATCTGG ACTCGCGCCT GGAAATGGCA ATGGATGCCC TGCGCTGCCC CCCCGGCGAC
ACGCCGGTGA ACGTTCTGTC CGGCGGCGAG AAGCGCCGCG TGGCTCTGTG CCGCTTGCTC
CTTCAAAAGC CCGACATTCT TCTGCTGGAC GAACCAACCA ACCATCTGGA CGCCGAAACC
GTCGCCTGGC TGGAACATCA CCTGCAGAGC TACCCCGGGA CGATTATCGC CGTCACCCAC
GACCGGTACT TCCTCGACAA CGTTGCCGGC TGGATTCTTG AGCTCGATCG AGGCGAGGGA
ATACCCTGGA AGGGCAATTA TTCCTCGTGG CTTGATCAGA AGCAGAACCG CCTGGCTCAG
GAGGAAAAGG CGGAGAGTGA ACGCCAGAAG ACCCTGCAGC GCGAGCTCGA GTGGATCAGG
ATGAGCCCCA AGGGACGCCA CGCCAAAAGC AAGGCGCGCA TCAGTTCCTA CGAGCAGCTC
CTGTCCCAGG AGAGCGAGAG GCGGGCCAAG GACCTGGAGA TCTATATCCC GCCCGGTCCC
AGGCTCGGTG ATATCGTCAT CGAGGCTGAC AATGTCTCCA AGGCCTACGG GGACCGCCTG
CTGGTCGAGG GGATGAGCTT CCGTCTGCCG CCCGGCGGGA TCGTCGGTGT TATCGGCCCC
AACGGAGCGG GCAAAACGAC CCTTTTCCGG ATGATTACCG GTCAGGAGGA GCCTGATGCC
GGCACCATAC GCACCGGCGA GACGGTGAAA ATCGCCTACG TGGACCAGAG CCGCGACGCC
CTTGATCCGA ACAAGAGTAT CTGGGAAGAA ATCTCCGGCG GCCAGGAGAC GCTTCAGCTC
GGCAAGGTGA GTGTCAATTC CCGCGCCTAT GTCTCCCGCT TCAATTTCTC GGGGAGTGAT
CAGCAGAAAA AAGTGGGGAT GCTCTCCGGC GGAGAGCGGA ACCGGGTCCA TATAGCAAAG
ATGCTCAAGG AGGGAGGAAA CGTCATCCTT CTGGACGAGC CGACCAACGA TCTGGATGTG
AACACCATGC GGGCATTGGA AGAAGCTCTG GAAAACTTCG CCGGATGCGC TGTGGTAATC
TCCCACGACC GATGGTTCCT CGACCGTATC GCCACCCATA TCCTCGCCTT CGAAGGGGAC
AGCCAGGCAG TCTGGTTCGA CGGAAACTAC TCGGAATACG AAGAGGATCG CAAGAAGCGC
CTCGGTGCCG CCGCTGACAT GCCGCACCGG ATCAAGTACC GGCAGTTGAC GCGGGTATAA
|
|---|
| Protein sequence | MSTDSTKIIY TMMRVSKYYD KKPVIKDISL SYFYGAKIGV LGLNGSGKST LLRIMAGVDK
DFNGQAVLSP GYTVGYLEQE PKLDESKTVR EIVEEGCQET VNLLNEFNEI TAAFADPDAD
MDKLLERQAE VQEKLDHLDA WDLDSRLEMA MDALRCPPGD TPVNVLSGGE KRRVALCRLL
LQKPDILLLD EPTNHLDAET VAWLEHHLQS YPGTIIAVTH DRYFLDNVAG WILELDRGEG
IPWKGNYSSW LDQKQNRLAQ EEKAESERQK TLQRELEWIR MSPKGRHAKS KARISSYEQL
LSQESERRAK DLEIYIPPGP RLGDIVIEAD NVSKAYGDRL LVEGMSFRLP PGGIVGVIGP
NGAGKTTLFR MITGQEEPDA GTIRTGETVK IAYVDQSRDA LDPNKSIWEE ISGGQETLQL
GKVSVNSRAY VSRFNFSGSD QQKKVGMLSG GERNRVHIAK MLKEGGNVIL LDEPTNDLDV
NTMRALEEAL ENFAGCAVVI SHDRWFLDRI ATHILAFEGD SQAVWFDGNY SEYEEDRKKR
LGAAADMPHR IKYRQLTRV
|
|---|
| |