Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU1611 |
Symbol | |
ID | 2687411 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | + |
Start bp | 1762910 |
End bp | 1766008 |
Gene Length | 3099 bp |
Protein Length | 1032 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637126291 |
Product | AcrB/AcrD/AcrF family protein |
Protein accession | NP_952662 |
Protein GI | 39996711 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.651571 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACATTG CCGAAATCTT CATCCGCCGG CCGGTCATGA CGAGTCTCAT CATGCTGGCG GTTATGCTTT TCGGCCTCAT CGCCTACGAC AAGCTGCCGG TCAATGACCT GCCCACCGTC GACTATCCGA CCATCCAGGT TTCCGCCACT CTGCCGGGCG CCAACCCCGA CACCATGGCC TCATCGGTGG CACTTCCCCT GGAGCGCGAG TTCTCCACCA TTGCCGGTGT CGACTCTATG ACCTCCACCA ACGGCATCGG CATATCCCGC ATTACCATCA AGTTCACCCT GGAGCGGGAC ATCGATGCCG CGGCCCAAGA TGTCCAGGCC GCCATTTCAA GGGCCCAGCG CCAGCTTCCT CAGGACATGC CGGCCCCTCC ATCGTTCCAG AAGGTGAATC CGGCTGATCA GCCGATCCTC TATCTGGTCC TCAGTTCGCC GACGCTTCCC CTCTCCACGG TCCACGAATA CGCCGATACC ATGATCGCCC AGCGGATTTC CATGGTCAAC GGCGTAGCCT CGGTACAGAT CTACGGCTCC CAGAAATATG CGGTACGGGT TCAGGTGGAC CCCAAGGCCC TGGCGGCCCG CAAAATCGGC ATTGACGAGG TGGCCCAGGC CCTGGAGCGG GGGAACGTGA ACCTTCCCAC CGGCACCCTC CAGGGAAAGC ACGAGGCCCT GACGATCCAG ACCAGTGGCC AGCTTTACAG CGCAAAGGAG TATGAGCCGC TCATCGTCGC CTATCGCAAC GGTTCACCGG TCCGTCTCGG AGAGATCGGC CGGGTTATTG ACAGCGTGGA GAACGACAAG GTGGCCGGCT GGTACAAACA GACCCGTGCC ATTGTCCTCG CCATCCAACG CCAGCCAGGC ACCAATACCA TCGAAGTGGT AAACAGGATT AAGGAGCTGC TTCCCCAGTT CCGCTCCCAA CTCCCCGGCT CGGTGGACCT GAGTATCCAC TTTGACCGGA CCGAGGGGAT CAAGGAGTCG GTCGCCGATG TGAAGTTCAC TATGGTGCTC ACCATCTGCC TGGTTATCAT GGTGATCTTT CTCTTCCTGC GCAACCTGCC GGCAACGGTA ATTCCGAGCC TGGCGCTACC GCTCTCCATT GTCGGTGCTT TTTCGGCCAT GTACCTGATG GGGTTTTCGG TCAATAACAT CTCACTGTTG GCTCTGACCC TGTCGGTGGG CTTCGTGGTG GACGACGCCA TTGTCATGCT GGAGAACATC GTCCGTCACC TGGAGAAGGG GGAGAGCCCC ATGGAGGCGT CCCTCCGCGG CTCCCGCGAG ATCGGATTCA CCATTGTCTC CATGACCATT TCATTGGTGG CGGTCTTTAT CCCGGTTCTT TTCATGAAAG GGATGCTCGG CCGGCTGCTC CACGAATTCG CCGTCACCAT CAGCCTGGCC ATTCTCATTT CCGGCTTCGT ATCGCTCTCG CTGACACCCA TGCTATGCAG CCGCTTCCTT CGTCCGCACA GTGGCGAAAA GGGCCACGGC AGGTTTTATA CGGTCATGGA GCGGTTTTTC GACGGCATGT ACCGCCTCTA TGAAGTGACT CTGGCAAAGG TTCTGAGGCT CCGCCGGACC GTGTTGGCCG GCACCCTTGC CATGACCCTG CTCACCATCT GGCTCTTCAC GAGAATCCCC ACAGGGCTGC TGCCCAGCGA CGACATCGGG GCCATCTTCG CTATTACCGA GGGTGCCCAG GGGATTTCCT TCGAGGAAAT GAAGGCCAAG CAGCAGCAGT TGGCGGCCAT TGTGCTCCAG GACCCGAACG TTGAAGGATT CATGTCTTCG GCGGGCGCCG CCGGGAGCCG GGTGTCCTCC AATTCGGGGT TCATGTTCAT TCGGCTCAAG CCCCGCCACG AGCGGAAGCT TAACGCGGAT CAGGTCATCC AGCAGCTCCG GCCGAAAGTC ATGGCTGTGC CCGGGATTCT CATGTTCCTC CAGAATCCGC CGCCGATTCG ACTGGAGGCT CAGTTGGCCA AGAGCCAGTA TCAGTTCGTG CTCCAGAGTC CCGATACGGA TGAACTCTAC CGGCGCGCAG CCGACCTGGA GGCCAGATTG AAGCAGGTGC CGCTCCTGCT GGACGTGACC AGCGACCTCC AGCTCAATAA TCCCCAGGTG CAACTCGACA TAGACCGGGA CAAGGCGTCG GCCCTCGGCA TCACCGCCCA CCAGGTGGAG GATGCCCTCT ATTACGCCTA CGGCTCCCGC CAGGTTTCCA CCATCTTTGC TCCAAACAAC CAGTTCAAGG TTATCCTGGA ACTGGAGCCC CGCTACCAGA CCGACCCGGC AGCCCTGTCC ATGCTTTACA TCCGTTCCCA GCAGGGCGAC CTTGTTCCTC TCAACACCCT CGCCACCCTG CGGCGGACCC TCGGTCCCCT TTCCGTGAAC CATCTGGGGC AGATCCCGGC GGTGACCATC TCCTTTAACC TGCGACCGGA CACCCCTCTC AGCGAGGCCG TGTCAGCCAT CGAGCAGGTG AGCCGCGATA CGCTTCCAGC TTCATTCACC ACCAGTTTCC AGGGAGTTGC CCAGGCCTAC CAGCAGTCGA CCACGGGGCT AATTGTCCTG ATCATCATGG CGATCGTGGT AATCTACATT GTCCTCGGTA TTCTTTATGA GAGCTACATC CATCCCCTCA CCATCCTGTC GGGTCTTCCG TCAGCCGGGT TCGGGGCACT CATTACCCTG ATGATCTTCG GCAAGGAACT GAATCTCTAC GGCTTTGTCG GTCTCATCAT GCTGATTGGC ATTGTTAAGA AAAACGCGAT CATGATGATC GACTTCGCCC TGGAGGCCCA GCGCACCGAA GGGAAACCGC CGCTGGAGGC AATCCACCAG GGGGCTCTCG TCCGTTTCCG CCCCATTATG ATGACCACCA TGGCGGCGCT GATGGGGACA CTCCCCATTG CGCTGGGGAT CGGTGCCGGG GCCGAGGCCA GGCGCACTCT GGGGCTGGCA GTGGTGGGGG GGCTTCTGGT GTCCCAGTTG CTGACCCTTT ACATAACACC GGTTATTTAT TACTACATGG ACCGCATGCA GGGATGGTTC GTCGGGAAAC TGCCGGGCCG CCGGAGGGTC AGCGCATGA
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Protein sequence | MNIAEIFIRR PVMTSLIMLA VMLFGLIAYD KLPVNDLPTV DYPTIQVSAT LPGANPDTMA SSVALPLERE FSTIAGVDSM TSTNGIGISR ITIKFTLERD IDAAAQDVQA AISRAQRQLP QDMPAPPSFQ KVNPADQPIL YLVLSSPTLP LSTVHEYADT MIAQRISMVN GVASVQIYGS QKYAVRVQVD PKALAARKIG IDEVAQALER GNVNLPTGTL QGKHEALTIQ TSGQLYSAKE YEPLIVAYRN GSPVRLGEIG RVIDSVENDK VAGWYKQTRA IVLAIQRQPG TNTIEVVNRI KELLPQFRSQ LPGSVDLSIH FDRTEGIKES VADVKFTMVL TICLVIMVIF LFLRNLPATV IPSLALPLSI VGAFSAMYLM GFSVNNISLL ALTLSVGFVV DDAIVMLENI VRHLEKGESP MEASLRGSRE IGFTIVSMTI SLVAVFIPVL FMKGMLGRLL HEFAVTISLA ILISGFVSLS LTPMLCSRFL RPHSGEKGHG RFYTVMERFF DGMYRLYEVT LAKVLRLRRT VLAGTLAMTL LTIWLFTRIP TGLLPSDDIG AIFAITEGAQ GISFEEMKAK QQQLAAIVLQ DPNVEGFMSS AGAAGSRVSS NSGFMFIRLK PRHERKLNAD QVIQQLRPKV MAVPGILMFL QNPPPIRLEA QLAKSQYQFV LQSPDTDELY RRAADLEARL KQVPLLLDVT SDLQLNNPQV QLDIDRDKAS ALGITAHQVE DALYYAYGSR QVSTIFAPNN QFKVILELEP RYQTDPAALS MLYIRSQQGD LVPLNTLATL RRTLGPLSVN HLGQIPAVTI SFNLRPDTPL SEAVSAIEQV SRDTLPASFT TSFQGVAQAY QQSTTGLIVL IIMAIVVIYI VLGILYESYI HPLTILSGLP SAGFGALITL MIFGKELNLY GFVGLIMLIG IVKKNAIMMI DFALEAQRTE GKPPLEAIHQ GALVRFRPIM MTTMAALMGT LPIALGIGAG AEARRTLGLA VVGGLLVSQL LTLYITPVIY YYMDRMQGWF VGKLPGRRRV SA
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