| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1554 |
|---|
| Symbol | |
|---|
| ID | 2685292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 1705571 |
|---|
| End bp | 1706740 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637126233 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | NP_952605 |
|---|
| Protein GI | 39996654 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.84144 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGAA AGAAGAAAAC CGTCGAAGAC CCCGCGCTGA CCCGTGCCTT GAAGGTCATG
GAGGCGGGCG CGTTGCCGGA TGCTGACCTG GCCGCCGAAT TCGCCACCCT GGCCGAGAGT
TACGGGAAGC TGCTGCGCAA ATTCAACAAG ACGCTCGTGA TCAGCGATGC CTACGAGGCC
CAGCATCAGG CAATGGCCAA GAAGCTGGAG GAGGCCACCT GGAAGTATCG TCAGTTGAAG
GATGTGGCGC TCCCGATCTG CATGTACTGC AAGAAGATCC GCTCCGACGA CGACTACTGG
CAGCGGCTGG AAACGTTTTT CTGCAACCAT GCCGATATCA TGTTCAGTCA CGGGATCTGC
CCGGACTGCA TCAAGACCGC CTATGAGAAG ATGGGGATGA ACAGGAGGGC CATGCCGCTG
CCGGATGCTG CCGTGACCGG ACAGCCGGCG GCGTCTCCCG AGCGGCAGCC GGTGGAGGAC
GACGCCCTCA GGGAGATGCG GGCGCTGGTG CGCCGGAGTG CCTTTGACGG GAGTCCGGTT
GCGCCCGAGG TGGAACAGTT CGTCGAAAAG TACGGCAAGC TGCTGCGCCG CTTCAGCAAG
ATCGTCTCCA TCAGCGACAG CTACCAGTCA CAGCTCCGGG AGCTCAACGC CCGGCTGGAG
CTGATGGCCC GCACCGATCT TCTCACCGGT CTCGCCAACC ACTGGGAGAT GGTGATGCGA
CTGGCAGCGG AGCAGAGTCG TTCGGAGCGA AACGGGAAGG TCTTTTCGAT CGTGCTGGCG
GATATCGATC ACTTCAAGAA GGTCAACGAC ACCCACGGGC ACCAGGCCGG CGACCGGGTC
ATCCGGGGGA TCGCCGACAC CCTGCGTACC AATATCCGCC GCGAAGACAT CTGCAGCCGG
TGGGGAGGGG AGGAGTTCCT CATCATACTG CCGGAGGCGG ATTTGCCGCG GGCCGGGGCC
GTGGCGGCGA AGCTCCTCGC CAAGGTGCGG AATACGGTGG TCCCGTGGGA TGGGCGCGAC
ATCCGGGTCA CCGTGAGCAT CGGCTATGGC ACCAGCGAAC CCGGCATGAG CGTCGATGAA
CTGATCAGGC GAGTCGACGA TGCCCTCTAC AGCGCCAAGG CCGCGGGCCG CGACCGGTTC
GCCGCGGCCG GTTCCCGCGC CGACGTCTGA
|
|---|
| Protein sequence | MPRKKKTVED PALTRALKVM EAGALPDADL AAEFATLAES YGKLLRKFNK TLVISDAYEA
QHQAMAKKLE EATWKYRQLK DVALPICMYC KKIRSDDDYW QRLETFFCNH ADIMFSHGIC
PDCIKTAYEK MGMNRRAMPL PDAAVTGQPA ASPERQPVED DALREMRALV RRSAFDGSPV
APEVEQFVEK YGKLLRRFSK IVSISDSYQS QLRELNARLE LMARTDLLTG LANHWEMVMR
LAAEQSRSER NGKVFSIVLA DIDHFKKVND THGHQAGDRV IRGIADTLRT NIRREDICSR
WGGEEFLIIL PEADLPRAGA VAAKLLAKVR NTVVPWDGRD IRVTVSIGYG TSEPGMSVDE
LIRRVDDALY SAKAAGRDRF AAAGSRADV
|
|---|
| |