| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1485 |
|---|
| Symbol | |
|---|
| ID | 2686169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 1626769 |
|---|
| End bp | 1629060 |
|---|
| Gene Length | 2292 bp |
|---|
| Protein Length | 763 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637126161 |
|---|
| Product | ribonuclease R, putative |
|---|
| Protein accession | NP_952536 |
|---|
| Protein GI | 39996585 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.36573 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGA AACGGGAGGA AGTCCTCGCG TTCATCCGCG AGCAAGGGGG CAGCACCCCC
TTCAGGGACA TGATGCAGGC CTTTGGCGTA ACCAAGGCCA ATCGGCTGGG ATTCAAGCAG
TTCGTGGACC AACTGGTGTC GGCGGGCGAT CTGGTGAAAC AGCGCGGCAA CCGCTACGCC
GTCCCGTCAG AGGAAACCGT CGTCCGGGGG CGTCTTGTCA CTCATCGCGA GGGATACGGC
TTCGTGGTTC CCGAGGGGGG AGGAGACGAC GTCTACGTCC CGGCCCGATA CCTGGGGGGA
AACCTCCACG GGGATGTGGT TGAAGTCCGG GTTGAATCCT TTAAGCGTGG AGGGAAGAAG
GAAGGGCGGA TTATCCGGAC CATCGAACGG GGGCTCAAGC GGATCGTCGG CCGATTCGAC
ACCGCCGGCG GGGTGGGGTT CGTCCAGCCG GACGACACCC GCATCACCCG GGATATCGCG
GTTCCCCAAA AAGCATGGGG GGGGGCCCGC AGCGGTCAGG TGGTAGTGGC GGAGCTTACG
GCCTGGCCCA CGGAGCGGAA GAAGGCGGAG GGGCGCATCG TGGAAGTGTT GGGCTCTCCC
GACGACCCCG AGGTTGAGGT CCTCACCATT ATCCGCAAGC ATGACCTTCC CTATGAATTT
CCCGTAGACG TACTGACTGA GGCCCGTTCC ACTCCGCAGG AGGTGCGCAG GGGGGACGTG
GCCAAACGGG TGGATCTGCG GGAGCGGCTT ACCGTCACCA TTGACGGCGA GACGGCCCGG
GATTTCGATG ACGCGGTATC CGTGCAGCGG GAAAAGGGGG GCGACATCCG CCTCTGGGTC
TCCATCGCCG ATGTGTCCCA CTACGTGAAA CCGGGATCTG CCCTGGACCG TGAAGCCTAC
CTGCGGGGAA CCTCTGTCTA TTTCCCCGAT CGCTGTATCC CCATGCTGCC CGAGGAACTT
TCCAACGGCA TCTGTTCGCT CAATCCCCAG GTGGAGCGCC TGACGCTCAC GGCCGAGATG
CTGTTCACCC GAAGCGGGGC CATTAAGTCC TCGTCGTTCT ATCCGAGCGT GATCAGGAGC
GCCGCACGGC TCACCTATAC GACGGTCCGC AAGGTGCTCG TAGACGGCGA TCCGGAGGCA
ATCAAGGCCA ACCGTCACCT GGTAGACGAC CTTGAAGTAA TGAAGGAGTT GGCGCTGCGC
CTCATGGAGA AGCGGAAAAA ACGCGGCAGC ATCGACTTCG ACCTGCCCGA GCCGCAGATC
GTCCTGGATC TCCAGGGGGA GATGGTGGAT ATCATCCGGT CCGAGCGCAA CCTTGCCCAC
CGGATCATTG AAGAGTTCAT GCTGGCGGCC AACGAGGCGG TGGCGTCCCA TATCGAGGAG
CGGGGAATAC CCTCTCTCTA TCGGGTTCAC GAACCGCCCG ACCCGACCAA GCTGACCGAC
TTCCGGGAGT TCATTTTCAA TTTCGGCTAT GCCTTCCGGA TGGATGGCGA CCGGGTCGAC
CCCCACGAAC TTCAGCGGCT CATCGACGAA GCCGAGGGAA AGCCCGAGGA GCGGATGATC
AACGAGGTGC TCCTGCGGTG CATGAAGCAG GCCCGCTACA GCCACGAAAA CTTGGGGCAT
TTCGGCCTGG CGGCCCGTTG CTACACCCAT TTCACCTCCC CCATCCGCCG TTATCCCGAC
CTGGTTGTGC ACCGCATTCT CAAGGACATT CTCGCCGGGG CCATGACTGA GAAGGAACAG
GAGCGCCTGG CCGCCGCCCT GCCGGAGACG GCCGAGCAGA CGAGTCGCCG GGAGCGTCTC
GCAATGGAGG CTGAACGGGA GATCGTGGCG CTCAAGAAGG CCCAATTTAT GAAGGAGCGG
GTCGGCGAAA CCTTTGAGGG CTATATCACC GGGGTAAGCT CCTTCGGCTT TTTCGTGGAG
CTGATCGATC TGTTTGTCGA GGGGATGGTT CATGTCTCTA CCCTGGCCAA TGACTTTTAC
CGTTACGAGG AGAAACGGCA CTCGCTGGTG GGAGAACGGA CAAAGGAGAC CTTCAGGATC
GGCGACAGGG TCAGCGTTCT GGTGGCTGCG GTGAGCATTG AGCGGCGGCA GGTGGAGTTC
GTTCTCGCGG GTCTCCACGA AGTCCGGCCG GGCTCGGCGG AAAGGACGTC GGCGACGGAG
GAGTATCCGC GGATACCGGT CAGGGGTAAG CGACCCAAGG CTCTTCAGGC ACCCCGGGGC
AAGGGGGGAG GGCGCGGCCG TGGTTCCGGG GAGAAGCGTA CGGGGGGCAA AGGTGGCCGC
CCCAAACGGT GA
|
|---|
| Protein sequence | MKRKREEVLA FIREQGGSTP FRDMMQAFGV TKANRLGFKQ FVDQLVSAGD LVKQRGNRYA
VPSEETVVRG RLVTHREGYG FVVPEGGGDD VYVPARYLGG NLHGDVVEVR VESFKRGGKK
EGRIIRTIER GLKRIVGRFD TAGGVGFVQP DDTRITRDIA VPQKAWGGAR SGQVVVAELT
AWPTERKKAE GRIVEVLGSP DDPEVEVLTI IRKHDLPYEF PVDVLTEARS TPQEVRRGDV
AKRVDLRERL TVTIDGETAR DFDDAVSVQR EKGGDIRLWV SIADVSHYVK PGSALDREAY
LRGTSVYFPD RCIPMLPEEL SNGICSLNPQ VERLTLTAEM LFTRSGAIKS SSFYPSVIRS
AARLTYTTVR KVLVDGDPEA IKANRHLVDD LEVMKELALR LMEKRKKRGS IDFDLPEPQI
VLDLQGEMVD IIRSERNLAH RIIEEFMLAA NEAVASHIEE RGIPSLYRVH EPPDPTKLTD
FREFIFNFGY AFRMDGDRVD PHELQRLIDE AEGKPEERMI NEVLLRCMKQ ARYSHENLGH
FGLAARCYTH FTSPIRRYPD LVVHRILKDI LAGAMTEKEQ ERLAAALPET AEQTSRRERL
AMEAEREIVA LKKAQFMKER VGETFEGYIT GVSSFGFFVE LIDLFVEGMV HVSTLANDFY
RYEEKRHSLV GERTKETFRI GDRVSVLVAA VSIERRQVEF VLAGLHEVRP GSAERTSATE
EYPRIPVRGK RPKALQAPRG KGGGRGRGSG EKRTGGKGGR PKR
|
|---|
| |