Gene GSU1420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGSU1420 
SymboltylA 
ID2687847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sulfurreducens PCA 
KingdomBacteria 
Replicon accessionNC_002939 
Strand
Start bp1557042 
End bp1557725 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content62% 
IMG OID637126095 
Producthemolysin A 
Protein accessionNP_952472 
Protein GI39996521 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1189] Predicted rRNA methylase 
TIGRFAM ID[TIGR00478] hemolysin TlyA family protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.581192 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGGTC AGGTGGTGGT GAACGATCAC CTGGCGGATA AGGCCGGGCT CCAGGTTCCG 
GTGGAAGCCG AAATCCGGCT CAAGGGGGAG GACATTCCTT TTGTGAGCCG GGGTGGCCTT
AAGCTCGCGA GGGCATTGGA GGAGTTCGGT ATCGATGTCG CGGACATGAC CGCCATTGAC
GTGGGTGCTT CCACCGGCGG CTTCACCGAC TGCCTGCTCC AGCGCGGTGC CCGGAAGGTC
TATGCCGTTG ACGTGGGGTA CGGTCAACTG GCCTGGAAGC TGCGCCAGGA CTCGCGCGTG
GTGAATCTGG AAAAGACGAA CATCCGCTAT CTGGAACCCG GCGCTCTGCC GGAGACACCC
GGCTTGGCAG TGATCGATGC GTCCTTCATT TCACTCGACA AGGTCCTGCC CTCCACCCTG
CGCCTTATCG GGGAAGAGGG TGTCATTGTC GCCCTCATCA AACCCCAGTT CGAGGTGGGA
CGGGGAGAGG TCGGCAAGGG CGGCGTGGTG CGCGACGAGG AGAAGCACCG CCGGGTGATT
GCCGACGTCG TGGCCCTTGC AGAAGGATTG GGCCTGATGG TTCTCGGCGT TACCGAGTCT
CCCATTCTCG GGCCCAAGGG AAATCGTGAG TTTCTGATCC ACCTTAAAAA GGCGGTTGGG
GAGACCCCGC CCCATAACCG GTAA
 
Protein sequence
MAGQVVVNDH LADKAGLQVP VEAEIRLKGE DIPFVSRGGL KLARALEEFG IDVADMTAID 
VGASTGGFTD CLLQRGARKV YAVDVGYGQL AWKLRQDSRV VNLEKTNIRY LEPGALPETP
GLAVIDASFI SLDKVLPSTL RLIGEEGVIV ALIKPQFEVG RGEVGKGGVV RDEEKHRRVI
ADVVALAEGL GLMVLGVTES PILGPKGNRE FLIHLKKAVG ETPPHNR