Gene GSU0946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGSU0946 
Symbol 
ID2685824 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sulfurreducens PCA 
KingdomBacteria 
Replicon accessionNC_002939 
Strand
Start bp1016762 
End bp1019290 
Gene Length2529 bp 
Protein Length842 aa 
Translation table11 
GC content65% 
IMG OID637125616 
Productsensory box/GGDEF family protein 
Protein accessionNP_952000 
Protein GI39996049 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATTC GGAGCACCCT CACAGCCGGC TGTTTTATCT TCGCCCTGCT CACGGGGCTG 
GTCGGCTATT TCGGCGGCAG CGCCATCACC AGGATCAGCG CCGAGTTCGA CGCGGTGACG
CGGGATGGCT TGCCGGCCAT TAGGACTCTC CACGACATCC GCCATGCGGG AGTGCGCATT
GTTGCCTCCA CCAGCGAGTT CGGACTGGTG AGCGTGGTCG GTCGCAACGG CGTTGCTGCC
CGCCATCAGG TTGAGGAAGA AAAAGAGCTC CTGGAACAGG GAGCCGGTCT GTACCAGTCC
GCGTTTTCCA CCCTGAAAGA CCTCTCCGAC CGTCTTGATC CCGAAACACG GCAGTATGTG
CAGGAAATCG ACCGGGCCGG CAGGGATCTC CTGGCGCTGA GCGCAGAGTC CATGGAGACC
GTGCGCCGCG TCAGCTCACC CGCGGCGATT TTGGAGGTAA AGGAGCGCTT CGAGACAGCG
GAGAGACACT TCCTCGACGT TGTCGACCGC GCTCTCGCCC TCGAACGGCG GCGGCTCGTC
ACACGTCAGC AGGAAGTCCA CGATTCCATT ACCCTGGCAC TGTTCACCCT CAGCGCGGCA
TCTGCGGTGG CGCTCCTCTT TGCAATGGGT GGCGGCACCC TCTCGGCGAT ACTGATTTCA
CGTCCCATAG CGCTCCTGCA GGAAGGGGTC GAGCAGGTGG GGCAGGGAAT CCTCGACACC
CGCATCGATA TCAGCGGCAA CAACGAGATC GGCCGGCTCG CCGGCGCCTT CAACCGCATG
ACCACGGAAC TCCGGGCGGC CAAGGACGAA ATCACCACGG CGCGCAACTA CCTGGACAAC
GTGATCTGCT CCATGGCCGA CGCCCTCCTG GTGGTGGATA CCAACGGTAC GGTCATGAAC
GTCAACCCGG CCCTCTGCGG GTTGCTCGGC TACCGGGAGA ACGAGTTGAT CGGCCGTTCC
TTCTCGTCCA TCCTGGCCGA CGGGGGGCAT GGGCAGAGCA TCATTGCCGA GATGGCCGAG
CAGGGGCAGG TTCCCGACCG GGAGCTCCTC TACCGGAGCC GCCAGGGCGA GCTGATCCCG
GTGGTCCTGT CCGGCGGCGC CATGCGGAAC CAGGACGGCG AGGTGTGCGG CATCGTCTGC
ATCGCTCACG ACATGAGGGA ACGCAAGAGA AGTGAAGAGG AAATCCGGCG GCTTGCCTAC
TTCGATCCCC TCACCGGCCT GCCGAACCGG GCACTGTTCC AGGACCGGGT CAGCCACGCC
CTGGCCGTGG CCAGGCGTGA GGAAGGTGCG GTGGCGCTGC TGTTCCTGGA CCTGGACCGG
TTCAAGGACA TCAACGACAC TCTCGGCCAT GCCATGGGAG ATCTGCTCCT GACGTCGGTG
GCCGACCGGC TCAAGGCCCA CGTGCGGGTC AGCGACACGT TGGCCAGGCT GGGCGACGAC
GAGTTCGTGG TCATCCTGAC CGGGGCGCGG GATGAGCGGG GAGTGAGCAT CGTGGCCCAG
TCGCTTCTGG ACCTGCTCAC CCCGTCCTTT GACCTGGAAG GAAAAGAGGT GTTCATCTCC
ACCAGTATCG GCATTGCCCT GTTCCCGTCC GACGGCGAGG ACGGCAATGT GCTCCTTTCC
CGGGCCGATA TGGCTCTGCA CGCGGCCAAG GAGGCCGGCC GCAACGTCTA TCGCTTCTAC
AGCGACGACA TGAACCGCTC CGCCCAGGAC CGGCGGGGGC TTGAGGACCG TCTGCGGCGC
GCCTTGGCCA ATGAGGAGTT CTATCTCGAT TATCAGCCCC AGATCGATAT GCGGACCGGG
GGAATCTTCG GCGTTGAGGC GTTGCTGCGC TGGAACCACC CCGAGGAAGG CCTTATCCCG
CCCGGGCGCT TCATTCCCGC GGCCGAAGAG ATGGGGTTCA TCCGCCGCAT CGGCGAGTGG
GTCCTGCGGG CAGCCTGTCT CCAGTGCCGT GCCTGGCAGG AGTCGGGCCT CCCGCCGGTC
AGGGTGGCCG TCAACGTGTC GGGGCACCAG TTCAACCAAC CGGGGTTCAT CGATATGGTC
GACCGGGTTC TGGAGGAGAC AGGGCTTGAT CCCACCCTTC TGGAACTGGA GCTGACCGAA
AGCACCCTGC TCGAAGGGGC CCGGGACACG ATCATGACCC TCATCGACCT GAAGGTAAGG
GGCATTCATC TGGCCATCGA CGACTTCGGC ACCGGGTATT CGTCCCTCAG CTACCTGAAG
CACTTCCCCA TCGACCGGCT CAAGATCGAC CGCTCCTTTG TCCGCGATAT CGTCTCCGAC
CTGGACGACC GGGCCATCGT GGAGGCGATC ATCGCCATGG CCCACAGCCT GGGGCTGCGG
GTCCTGGCCG AGGGGGTCGA GCGGGAGGAG GAGCTGGAGT TGCTGCGGGA GCGGGGGTGC
GACGAGGTTC AGGGGTACTA CTTCGGCAGG CCCATGTCGG CCCGGGACCT GGAGGCGCGC
CTGATGGCGG CGTTGCCCGC CCGCGGGACC GCACCCCTGC GGCTGATAGC GAGGGCCGAA
GAGGGGTAG
 
Protein sequence
MKIRSTLTAG CFIFALLTGL VGYFGGSAIT RISAEFDAVT RDGLPAIRTL HDIRHAGVRI 
VASTSEFGLV SVVGRNGVAA RHQVEEEKEL LEQGAGLYQS AFSTLKDLSD RLDPETRQYV
QEIDRAGRDL LALSAESMET VRRVSSPAAI LEVKERFETA ERHFLDVVDR ALALERRRLV
TRQQEVHDSI TLALFTLSAA SAVALLFAMG GGTLSAILIS RPIALLQEGV EQVGQGILDT
RIDISGNNEI GRLAGAFNRM TTELRAAKDE ITTARNYLDN VICSMADALL VVDTNGTVMN
VNPALCGLLG YRENELIGRS FSSILADGGH GQSIIAEMAE QGQVPDRELL YRSRQGELIP
VVLSGGAMRN QDGEVCGIVC IAHDMRERKR SEEEIRRLAY FDPLTGLPNR ALFQDRVSHA
LAVARREEGA VALLFLDLDR FKDINDTLGH AMGDLLLTSV ADRLKAHVRV SDTLARLGDD
EFVVILTGAR DERGVSIVAQ SLLDLLTPSF DLEGKEVFIS TSIGIALFPS DGEDGNVLLS
RADMALHAAK EAGRNVYRFY SDDMNRSAQD RRGLEDRLRR ALANEEFYLD YQPQIDMRTG
GIFGVEALLR WNHPEEGLIP PGRFIPAAEE MGFIRRIGEW VLRAACLQCR AWQESGLPPV
RVAVNVSGHQ FNQPGFIDMV DRVLEETGLD PTLLELELTE STLLEGARDT IMTLIDLKVR
GIHLAIDDFG TGYSSLSYLK HFPIDRLKID RSFVRDIVSD LDDRAIVEAI IAMAHSLGLR
VLAEGVEREE ELELLRERGC DEVQGYYFGR PMSARDLEAR LMAALPARGT APLRLIARAE
EG