Gene GSU0688 details

Gene Information

• Locus tag: GSU0688
• Symbol: shc-1
• ID: 2687053
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sulfurreducens PCA
• Kingdom: Bacteria
• Replicon accession: NC_002939
• Strand: -
• Start bp: 725430
• End bp: 727469
• Gene Length: 2040 bp
• Protein Length: 679 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637125360
• Product: squalene-hopene cyclase
• Protein accession: NP_951745
• Protein GI: 39995794
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01507] squalene-hopene cyclase; [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0586149
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATCT CAAAAAATCC CATTTCGCAC GCACTCACTT CGTTCAATGA TGCGGCACGG 
GAAACAGCTG ACAATAGTGC CGCACGCAAG TCGGGGAAAA TCCACCACCT CCCCGCCACC 
ATTTGGAAAA AAAAGGAATC GACGGTATCG AGCCCTCTCG ATATAGCTAT CGAGCGGACC 
CAGGAATTCT TTTTCCGCGA GCAGCTCCCC GCCGGCTACT GGTGGGCCGA GCTGGAATCC 
AACGCTACTA TAACCGCCGA ATACATCATG CTGTTCCACT TCATGGGGCT GGTTAACCGT 
GAAAAAGAGC GGAAGATGGC CAATTACCTT CTCCGCCAGC AGACTACGGA GGGCTACTGG 
ACCATCTGGC ACGGCGGTCC CGGCGACCTT TCCACCACAA TCGAGGCCTA TTTCGCCCTG 
AAGCTCGCCG GCTACCCGGC CGATCATCCG TCCATGAGCA AGGCCCGGGC GTTCATCCTA 
GAGCACGGCG GCATCCTCAA GGCGCGGGTC TTCACCAAGA TATTCCTTGC CCTGTTCGGG 
GAGTTCTCCT GGCTGGGGGT TCCCTCCATG CCCATCGAGA TGATGCTGCT CCCCGCCGGC 
TTCACCTTCA ACATGTACGA GTTTTCCAGC TGGTCACGGG CAACGATCAT CCCCCTCTCC 
ATCGTCATGG CGGAGCGGCC GGTGCGCAAG CTGCCCCCCT GGGCCCGGGT GCAGGAGCTT 
TACGTGCGCC CCCCGCGGCC CACGGACTAT ACCTTCACCA AGGAAGACGG TATCCTCACC 
TGGAAGAACA TCTTCATCGG CATCGACCAC GTACTGAAGG TGTACGAGGC GAGCCCCATC 
CGGCCGGGCA GGAAGAAAGC CATGGCCATC GCCGAGAAGT GGGTGCTCGA GCACCAGGAG 
CCCACCGGCG ACTGGGGGGG CATCCAGCCC GCCATGCTCA ACTCGGTGCT GGCGCTCCAC 
GTACTCGGTT ACGCCAACGA CCATCCGGCC GTGGCCAAGG GGCTGCAGGC CCTGGCCAAC 
TTCTGCATCG AGGGTGAGGA CGAACTGGTC CTCCAGTCCT GCGTCTCGCC GGTATGGGAT 
ACGGCCCTGG GCCTCATGGC CATGGTCGAC TCGGGAGTCC CCACCGATCA CCCTTCCCTC 
TCCAAGGCGG CCCAATGGCT TCTGGACCGT GAAGTCCGCA GGCCGGGCGA CTGGAAGATC 
AAGTGTCCCG ATCTGGAGCC CGGCGGCTGG GCCTTCGAGT TCATGAACGA CTGGTATCCC 
GATGTGGACG ACTCGGGTAT CGTCATGATG GCCATCAAAA ACGTGAAGGT TAAGGACCAG 
CGGGCCAAAG AGGACACCAT CACCCGCGGC ATCGCCTGGT GCCTGGGCAT GCAGAGCAAG 
AACGGCGGCT GGGGGGCCTT TGACAAGGAC AACACCAAGC ACATCCTCAA CAAGATCCCC 
TTCGCCGACC TGGAGGCCCT CATCGACCCC CCCACGGCGG ATCTGACCGG CCGCATGCTG 
GAGCTCATGG GGACCTACGG TTATCCCAAG GACCACCCAG CGGCGGTCAG GGCGCTGAAG 
TTCATCCGTG AGACCCAGGA ACCCGACGGT CCCTGGTGGG GACGGTGGGG GGTAAATTAC 
ATCTACGGCA CTTGGTCGGT CATGTCCGGA CTTGCCGCCT TTGGCGAAGA CATGAGCCAG 
CCTTGGATCC GCAAGGCCGT GGACTGGCTC GTGGAGCACC AGAACGAAGA CGGCGGCTGG 
GGCGAGTGTT GCGAGTCGTA CGCCGATCCC CGGCTGGCCG GCGTCGGGCC CAGCACGGCG 
TCTCAGACAG GATGGGCCCT TCTCACGCTC CTTGCCGCCG GCGAGGTGGC AAGCTCGTCC 
GTGGTGCGGG GAGTCCAGTA TCTCCTCGAC ACCCAGAAGC CCGACGGGAC CTGGGACGAG 
GACGCCTTCA CCGGCACGGG CTTCCCGAAA TTTTTCATGA TCAAGTACCA CATCTACCGG 
AACTGCTTCC CTCTCATGGC GCTGGGACGC TACCGGACGC TTGCGGGCAA AGGGCTCTGA 

 

Protein sequence

MKISKNPISH ALTSFNDAAR ETADNSAARK SGKIHHLPAT IWKKKESTVS SPLDIAIERT 
QEFFFREQLP AGYWWAELES NATITAEYIM LFHFMGLVNR EKERKMANYL LRQQTTEGYW 
TIWHGGPGDL STTIEAYFAL KLAGYPADHP SMSKARAFIL EHGGILKARV FTKIFLALFG 
EFSWLGVPSM PIEMMLLPAG FTFNMYEFSS WSRATIIPLS IVMAERPVRK LPPWARVQEL 
YVRPPRPTDY TFTKEDGILT WKNIFIGIDH VLKVYEASPI RPGRKKAMAI AEKWVLEHQE 
PTGDWGGIQP AMLNSVLALH VLGYANDHPA VAKGLQALAN FCIEGEDELV LQSCVSPVWD 
TALGLMAMVD SGVPTDHPSL SKAAQWLLDR EVRRPGDWKI KCPDLEPGGW AFEFMNDWYP 
DVDDSGIVMM AIKNVKVKDQ RAKEDTITRG IAWCLGMQSK NGGWGAFDKD NTKHILNKIP 
FADLEALIDP PTADLTGRML ELMGTYGYPK DHPAAVRALK FIRETQEPDG PWWGRWGVNY 
IYGTWSVMSG LAAFGEDMSQ PWIRKAVDWL VEHQNEDGGW GECCESYADP RLAGVGPSTA 
SQTGWALLTL LAAGEVASSS VVRGVQYLLD TQKPDGTWDE DAFTGTGFPK FFMIKYHIYR 
NCFPLMALGR YRTLAGKGL