Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU0474 |
Symbol | |
ID | 2686193 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | + |
Start bp | 503803 |
End bp | 506181 |
Gene Length | 2379 bp |
Protein Length | 792 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637125141 |
Product | sensory box/GGDEF family protein |
Protein accession | NP_951533 |
Protein GI | 39995582 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATTTCA CAAAAATCTC CGCACTCCAC TACCGCCTTC CTTCACCGGT GCGGCAGTTC ATCGTGCTGC TTTCGATCAT TTTTCTGATC GAAATGCTGC TCATGGCGGT CCTGCCCCAA GTTACCGGCC GTGAAGTCGA GTTTAAGGAT GCACTTGTCG ACAGCATGGG GCTCGTCACG GTTGCCGCGC CGTTTCTGTG GGCTTTCATT GTGCGTCCCC TGCGCCGCAC GGCCGTTGCG GCCGTTTTCC GGGAGGAGGT ACTCCTCCGC CAGATGGTCG ACGGGGTGAT TACTTTCGGG GAAGACGGCA CGATCCGTTC CCTCAATCCG GCCGCCGAGC GGATGTTCGG CTATCGGGAC GATGAGGCCG CCGGCATGGC CATCGACTGC CTGCTGTCGG CCGACGGGGG CTATTTCCGA TTTGCGGTAC AGGCATCCGG CGGCCATGGC ACACGCCAGC TCGCCTATGA ACTGGAAGGG ATCCGCCGGG ATGGCAGCCG CTTCGTTGCC GATCTTTCCG TCAGCCGGAT CGTTTTTGAA GATCACCGGG CAGTGATCGG CATTGTCCGG GACATCACCG CCCGCAAACG GGACGAGCAG AATCTCCTCG TCTTCAAACG GGCCATCGAG TCGAGCGTAA ACGGCATCAC TATCACCGAC GCGACTAACG GCGAAAACCT AATCATTTAC GTGAATCCTG CATTCGAGCG GATGACCGGC TACGCGGGAC ACGAGGTTCT TGGGAAGAAC CCGCGTTTTC TCAGGGGGGA TGACCGGGAC CAGGTGGAAC TCAGGAAGCT GGCCATGGCC CTGGAGGAAC GCAGGGAGGG CTACTTTGTC CTGCGCAACT ACCGCAAGGA CGGCAGCCAG TTCATGAACG AACTTTACGT GGCGCCGGTG CGCGACCGTG ATGGCGCAGT CACCAATTAC ATCGGCATCA TGAATGATAT CAGCGACCAG CGGCGCTACG AGGAACAGCT GGTCTACCAG GCCACTCACG ACCCCCTGAC CGGCCTTCCC AACCGTAATC TCCTGCAGGA CCGCCTTGGG CAGGCGCTCG CTCTGGAATC CTTCCGCCGT CGCAATCCCA TCGGCGTCAT GTTCCTGGAT CTCGACAACT TCAAAAAGAT CAACGATACC CTGGGGCACA CGGTGGGAGA CATGCTGCTC AAGGCCGTCG CCAACCGCCT GCGCAACTGC GTGCGCGGCG GCGACACGGT TTCGCGGCTG GGAGGGGACG AATACATCCT TATCCTTCCC AATGTAAAGG AAATGCATGA CGTGACCACT GTGGCCAAGA AGCTGCTCGG CGTATTTTCC ACGCCGTTCC TGCTCATGGG ACACGAGCTC TACATCACGG CAAGCATCGG TATCACCCTC TTCCCCTCCG ATGGCGACAC GGTGGATGCG CTCCTCAAGA ATGCCGATGC CGCCATGTAT CATGCCAAGG AGCAGGGGAA GAACAACTAC CAGTTCTATT CAGAGGAGAT GAACACGCGG GTCTTCGAGC GGATGGCTCT GGAAACGAGC CTCCATCGGG CGATTCGGCA GCATGAGTTT CTGCTCTGCT ACCAGCCTCG GGTCGATCTG CGGACCGGAA GGATCAGCGG GGTGGAAGCC CTTGTGCGTT GGAACCACCC GGAGATGGGG CTCGTGCCGC CGGCCAGGTT CATCCCTCTG GCCGAGGAAA CGGGGCTCAT CGTGCCCATC GGCGAGTGGG TCCTGCGCAC CGCCTGCGCC CAGAACAAGG CATGGCAGGA TGCGGGGCTC CCGCCACTGA GGATGGCGGT GAACCTTTCG GCCCGGCAGT TCCGTCAGGA AAATCTCATC CAGATGGTCG CCGACGCCTT GGCCGAAACG GGTCTCGACC CCCGCTGGCT GGAGCTGGAG CTGACCGAAA GCCTCCTCAT GGAGCGGGCC GAGCAGTCCG TGTCGATCCT CCGCTCCCTG GCGGATATGG GGATCGACAT CGCCGTGGAC GATTTCGGCA CCGGCTATTC GTCTCTGGGG TATCTCAAGC GGTTCCCGAT TACGAACCTG AAGATCGATC AATCGTTCAT CCGCGACATA GCGAGCGATC CGGACGACGC CATTCTGGTG CGGACCATCA TCACCATGGC CCACGGCCTC GGCATGAAGA CCGTCGGCGA AGGGGTCGAA TCTCTTGAGC AGATTGATTT CCTCTATCGG CACGGCTGCG AAGAAGTGCA GGGATACTAT TTCAGCAGGC CGCTTACCGC TGAGGGATGC GAGGAGCTGC TTCGCGAGGA GAGGTTTCTG GATCTTCGGG CGCTCCGGGA TGGGTTGCCG GGCCAGAGGA GCGAGGAGCG CATTCGCGCC CTGGCGTCAT CCGCTGATGA CTGCCGCGTT ACAGCGTAA
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Protein sequence | MDFTKISALH YRLPSPVRQF IVLLSIIFLI EMLLMAVLPQ VTGREVEFKD ALVDSMGLVT VAAPFLWAFI VRPLRRTAVA AVFREEVLLR QMVDGVITFG EDGTIRSLNP AAERMFGYRD DEAAGMAIDC LLSADGGYFR FAVQASGGHG TRQLAYELEG IRRDGSRFVA DLSVSRIVFE DHRAVIGIVR DITARKRDEQ NLLVFKRAIE SSVNGITITD ATNGENLIIY VNPAFERMTG YAGHEVLGKN PRFLRGDDRD QVELRKLAMA LEERREGYFV LRNYRKDGSQ FMNELYVAPV RDRDGAVTNY IGIMNDISDQ RRYEEQLVYQ ATHDPLTGLP NRNLLQDRLG QALALESFRR RNPIGVMFLD LDNFKKINDT LGHTVGDMLL KAVANRLRNC VRGGDTVSRL GGDEYILILP NVKEMHDVTT VAKKLLGVFS TPFLLMGHEL YITASIGITL FPSDGDTVDA LLKNADAAMY HAKEQGKNNY QFYSEEMNTR VFERMALETS LHRAIRQHEF LLCYQPRVDL RTGRISGVEA LVRWNHPEMG LVPPARFIPL AEETGLIVPI GEWVLRTACA QNKAWQDAGL PPLRMAVNLS ARQFRQENLI QMVADALAET GLDPRWLELE LTESLLMERA EQSVSILRSL ADMGIDIAVD DFGTGYSSLG YLKRFPITNL KIDQSFIRDI ASDPDDAILV RTIITMAHGL GMKTVGEGVE SLEQIDFLYR HGCEEVQGYY FSRPLTAEGC EELLREERFL DLRALRDGLP GQRSEERIRA LASSADDCRV TA
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