Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU0017 |
Symbol | mfd |
ID | 2685756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 25356 |
End bp | 28829 |
Gene Length | 3474 bp |
Protein Length | 1157 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637124679 |
Product | transcription-repair coupling factor |
Protein accession | NP_951079 |
Protein GI | 39995128 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0270668 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACAGA CCGATACCGA TCTCTTCAAA CGCCTCACCG ACCGCCTCAC CCCCCCTGCC GCCCGGCTCA CCCTTGCCGG GCTCAGGGGG TCGTCGCCAG CCTATCTGCT GGCCCGGCTC ATCGGGGAGG CGGGAGCTCC ATTCCTCGTG GTCGTCCCCG ACGCCGAAGC CGCCGCCGAG CTCACCACGG AACTCCGGTT CTTCACGGGA AGACCCGGCG ACATCCTCCT GTTTCCCGCC TGGGACACCT CGCCCTTTGA AAAGGCATCG CCCCATGCCG ACGTGACGGC CCAGCGGCTG GCAGTCCTGC GCCGGCTGGC GGACCGCAGG GCGGCTGCCG TGGTAACCAC GCCGGAGGCT CTGCGCCAAC GGGTAGTGCC GCGCTCCCTT CTGGACAGTG CCTCACTCTA CTTTCTGCCC GGCGAAGAGA GCGACCGGGA CGATCTCCTG TCACGGCTGG TGACCCTCGG CTACCTCAAC GTGCCGCTGG TGGAGGACCG GGGAACCTTT GCCGTGCGGG GCGGCATCGT CGACATCTTC CCGCCGGGTT TCGATCTGCC GGTGCGGATC GAATTCTTCG GCGACTTCGT CGATACCATC CGGAGCTTCG AACCGCTCTC CCAGCGCTCC CTCCAGCCCC TGGAAGAGTT ACTGCTGCTC CCGTCGCGGG AGTTGCTCCT GACTGCCGAT ACCCTGCAGG GGGCGGCGTC CCGCATCAAG ACGCGCTGCG ACGATCTGGA GATATCCCCC TTGGTCCGCC GCGAGCTGCT GGAACAGCTC CAGAACGGCC TCTACCCGGC AGGAGTCGAA TGGCTCCTTC CCCTCTTTCA CCAGAATCTG GAGACCCTGC TTGACTACGC CGGCGACGCC GTGCGGGTCC TGGTCGATCC GGCAGCCCAG GAAGAGGAGG GAGAACGACT CTCGCGGGAA CTGGAGGAGG CTTCCGACCG CGCCCGGGAG CGGGGCGAGC TCTTTCCCGC GCCGGAAAGC CTCTTCCTCG CCCCGGCGGA TACTGCGGCC GCCCTGGCTG CGGGGAGACT GGTGACCATC CCCTTCCTGC ACCTGAACGA GGGTGATTCC CCGGAGACCA TCGACATTGC CACCGAGACG AACGCCGACC TCAAGGTGGA CATCTCGCCC GACAGCGAGG GGGTCCTGCG GCCGCTGGCC GCTCGCCTGA CCGGCTGGAT CGAGGAGCGG CAACGGGTGA TCATAGCCTG CCACCAGCGC GGTCAGGCCC AGCGGCTGTA TGAGTTACTG GCCCATTACC CGGTCCCCCT TACCGTCTCG GACCGCCCCT TCCCGGCGGA ACGGGAGCGG GACGACGGCA GGGTGGACAT CGTAATCGGC GAAATCTCTC GCGGGTTCAG GTTGCCGGAA GGACGGCTCG TGGTCATCGC CGAAGAGGAA ATCTTCGGCA AGCGGCAAAA ACGGCGCGGC ATCACCGAGT TGCGCAAAAA GCAGATCATG ACCTCCCTGG CGGAGCTGAA GCCGGGCGAT CACATGGTTC ACCTGGACCA CGGGGTCGGC ATTTACCGTG GACTCCAGCA CCTTTCGCTC AGCGGCTGTG CCGGCGACTT CCTGCTGCTG GAGTATGCGG GGGGGGACAA GCTCTACCTG CCGGTGGACC GGCTCAGCCT GGTGCAGCGC TACGTGGGCT CCGAGGGGAT CGAACCGCGG GTCGACCGGC TCGGCGGCAC CTCATGGGAG AAGGCCAAGG GCAAGGCCCG CGCGGCAGTC CAGGAGATGG CCGAAGAACT CTTGCGGATC TACGCGGCCC GCCAACTTCA CGAGGGGCAC CGGTTTTCCC CCCCCGACGA TCTCTACCGG GAGTTCGAGG CCTCCTTCGC CTACGAGGAG ACCTCCGACC AGCTGGCTGC CATCGAAGAC GTCATCGCCG ACATGACCAG CAACCGGCCC ATGGACCGGC TGGTCTGCGG CGACGTGGGC TACGGCAAGA CCGAAGTGGC CATGCGGGGA GCTTTCAAGG CGGTCATGGA CGGCAAGCAG GTGGCGGTCC TGGTGCCGAC CACAGTCCTG GCCCAGCAGC ATTTGGAGAC CTTCAGGGCG CGGCTTGGGG CCTACCCGGT CACCATTGAA ATGGTTTCCC GCTTCAGGAC TCCCAAGGAA CAGAAGGACA TCCTGGAGCG GGTGAAAAAG GGGACCGTCG ATGTCATCAT CGGCACCCAC CGACTCCTTC AAAACGATGT GACGTTCAAG GACCTGGGGC TTCTCATCGT GGACGAGGAG CAGCGCTTCG GGGTAACCCA CAAGGAAAAG CTGAAAAAGT ACAAGGCAGC GGTGGACATC CTGACCCTCA CCGCCACCCC CATTCCCCGC ACTCTCTACA TGTCGCTCAT GGGTATCCGC GACCTCTCCA TCATCGACAC CCCGCCCGTG GATCGGCTGG CAGTTAAGAC CTTCGTGGCC CGTACCTCCG ACGAGCTCAT CCGCGAAGCG GTTCTGCGGG AGCTCCGAAG GGGAGGGCAG GTGTTCTTCG TCCACAATCG GGTCCAGTCC ATCGGAGCCT GGTACGAACA CCTGCGCCGC ATCGTGCCCG AGGCAAAGAT CGCCGTGGGG CACGGCCAGA TGGACGAAGG CGAGCTGGAG AAGGTGATGC TTGGCTTCAT GCACGGGGAA ACGAACCTTC TGCTCTGCAC CACGATCATC GAGTCAGGCC TGGACATCCC CAGTGCCAAC ACCCTCATCG TGGACCGGGC TGACACCTTC GGACTGGCCC AGCTTTACCA GTTGCGGGGA AGGGTAGGGC GCTCCCGGCA GCGGGCCTAC GCCTATCTCC TCATACCCGG CGAAGGCGCC ATCTCGTCCG ATGCCCGGGA GCGGCTGCGG ATCATCCAAG AACTGAACGA GCTGGGGGCC GGCTTCCGCC TGGCCACCCA CGACCTGGAG ATCAGGGGCG CCGGCGATCT CCTGGGGGCC AAGCAGTCGG GCAACATTGC CGCCGTCGGC TTCGACCTCT ACACAGAACT CCTAGAAGAG GCGGTCCAGA AACTCAAGGG CGAGGAGCCG GTAGAGCGGG TGGAGCCGGA GATCAACCTG CGGGTGCCGG CCTTCATCCC CGAGGACTAT GTGCGCGAAC CGAATCAGCG CCTCGTCATC TACAAGAAGC TGACCCAGGC CACGGCCGAA GAGGAGGTGG GCGAGGTCAT GGAAGAACTG GTGGACCGGT TCGGCACGCT GCCGCTGGCG GCCTCCTACC TGCTGGACGT GATGAAGCTG CGGATCATGC TCAAGCACTT CCTGGTCCGG ATGGCGGAGT TTGACGGCAA ACGGCTCTGT CTCTCATTTC ACGAGAAAAC TCCGGTTTCG CCCGACACCA TTATCGGTCT CATTAAAGCA AACCCAAAAC GGTACCAGTT CACCCCGGAC TTCCGTCTCG TGGCGGAACT GGCCGACACC AGCTTCGAGG GGGTCCTGGC CGAAGCCAGA AATCTCTTGA AAAGGCTGGG GTGA
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Protein sequence | MTQTDTDLFK RLTDRLTPPA ARLTLAGLRG SSPAYLLARL IGEAGAPFLV VVPDAEAAAE LTTELRFFTG RPGDILLFPA WDTSPFEKAS PHADVTAQRL AVLRRLADRR AAAVVTTPEA LRQRVVPRSL LDSASLYFLP GEESDRDDLL SRLVTLGYLN VPLVEDRGTF AVRGGIVDIF PPGFDLPVRI EFFGDFVDTI RSFEPLSQRS LQPLEELLLL PSRELLLTAD TLQGAASRIK TRCDDLEISP LVRRELLEQL QNGLYPAGVE WLLPLFHQNL ETLLDYAGDA VRVLVDPAAQ EEEGERLSRE LEEASDRARE RGELFPAPES LFLAPADTAA ALAAGRLVTI PFLHLNEGDS PETIDIATET NADLKVDISP DSEGVLRPLA ARLTGWIEER QRVIIACHQR GQAQRLYELL AHYPVPLTVS DRPFPAERER DDGRVDIVIG EISRGFRLPE GRLVVIAEEE IFGKRQKRRG ITELRKKQIM TSLAELKPGD HMVHLDHGVG IYRGLQHLSL SGCAGDFLLL EYAGGDKLYL PVDRLSLVQR YVGSEGIEPR VDRLGGTSWE KAKGKARAAV QEMAEELLRI YAARQLHEGH RFSPPDDLYR EFEASFAYEE TSDQLAAIED VIADMTSNRP MDRLVCGDVG YGKTEVAMRG AFKAVMDGKQ VAVLVPTTVL AQQHLETFRA RLGAYPVTIE MVSRFRTPKE QKDILERVKK GTVDVIIGTH RLLQNDVTFK DLGLLIVDEE QRFGVTHKEK LKKYKAAVDI LTLTATPIPR TLYMSLMGIR DLSIIDTPPV DRLAVKTFVA RTSDELIREA VLRELRRGGQ VFFVHNRVQS IGAWYEHLRR IVPEAKIAVG HGQMDEGELE KVMLGFMHGE TNLLLCTTII ESGLDIPSAN TLIVDRADTF GLAQLYQLRG RVGRSRQRAY AYLLIPGEGA ISSDARERLR IIQELNELGA GFRLATHDLE IRGAGDLLGA KQSGNIAAVG FDLYTELLEE AVQKLKGEEP VERVEPEINL RVPAFIPEDY VREPNQRLVI YKKLTQATAE EEVGEVMEEL VDRFGTLPLA ASYLLDVMKL RIMLKHFLVR MAEFDGKRLC LSFHEKTPVS PDTIIGLIKA NPKRYQFTPD FRLVAELADT SFEGVLAEAR NLLKRLG
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