Gene DET1506 details

Gene Information

• Locus tag: DET1506
• Symbol: smpB
• ID: 3229249
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: +
• Start bp: 1361164
• End bp: 1361682
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637121066
• Product: SsrA-binding protein
• Protein accession: YP_182206
• Protein GI: 57233786
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000124278
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATTATG CCCGGATTGT AAGCAATCTG CATCTGGGGT ATGATATAAT ACATATGGCA 
GAATACGTAA CCCTGACAAC TAACCGCAAG GCATTTCACA ACTATTTCCT GGAAGAAAAA 
TACGAAGCCG GGATAATGCT GCTGGGCACG GAGATAAAAT CCCTCCGAAG CGGCAGAGTA 
AATATGGGAG ATGCCTATGT AAAGCCCCAG AGGGGCGAAC TCTGGCTGGT AAATGCCCAT 
ATTTCAGCCT ACGAGTGCAG CGGACATACC AGCCATGAAC CAATGCGGGA ACGCAAACTG 
CTGATGCACC GCAAGGAAAT AGCCCTGCTC ATGTCAAAGG TCAAAGAAAA AGGGCTGACA 
CTGATACCGG TTCGTATTTA CCTAAAAAAC GATATCGCCA AGGTAGAGCT GTCACTGGGG 
CGGGGTAAGA AGCTCTATGA CAAAAGGGAT ACCATAACCA AGCGGGACAC CGAACGCGAA 
CTTGAGCGGG AGGTCAAATA CCGCAATTTC CGCCGCTAG 

 

Protein sequence

MHYARIVSNL HLGYDIIHMA EYVTLTTNRK AFHNYFLEEK YEAGIMLLGT EIKSLRSGRV 
NMGDAYVKPQ RGELWLVNAH ISAYECSGHT SHEPMRERKL LMHRKEIALL MSKVKEKGLT 
LIPVRIYLKN DIAKVELSLG RGKKLYDKRD TITKRDTERE LEREVKYRNF RR