| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1472 |
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| Symbol | |
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| ID | 3229306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides ethenogenes 195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002936 |
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| Strand | + |
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| Start bp | 1326822 |
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| End bp | 1332326 |
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| Gene Length | 5505 bp |
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| Protein Length | 1834 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637121032 |
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| Product | NHL/RHS/YD repeat-containing protein |
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| Protein accession | YP_182172 |
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| Protein GI | 57233842 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCTGTTG AATCGAGTAA ATTTGATAAA AAGACTGGCA TATTGACAGC TTATCTTAAT
CATTTTAGCC ACTATGGAGA GCTGGCAAAT CCTCTTATAT CTGGGCCGGG CATGGTTATG
GATTCTCAGG TCGGGCTACA ATCTGGTGCA TCGATTTACA GCTACTCAAT TGACACTCCT
GCCGGACCTG GCGGTTTTAA ACCCAAGATT GAATTAATCT ACAATAGTGG TTCTGTAGAT
GAGATGAAAA ACAAACGGTC GCTTGGCTCT TGGGTGGGTA TTGGATGGAG TTTGAGCCTT
GGCCGAATAA CTCACGAACC AATTGCTGAC AAATACTTCC TCGAATTCAA CAATGGTTCG
TATGAACTCG TAACAGGTGA TGGGATAAAT TACTATACCA AACCACAAGA ATTTCTAAAG
ATAACCCGCT CTGGGGATAT TTGGGAAGTC TATGATAAAA ATGGCTACTA TTATGAATTT
GGTGGTAGCA CTGGATCTAC CGCGGTACAA TACCTGACCA GTGCAGATGG TGGAAGTTAT
CGCTGGGATT TAAGTATTAT AAGGGATACC AATGGAAATG AAGCAACAGT CAGCTATATC
CAAGATATAA AAGGCACTTC ACCTGATACA TGGGTAAGAT CAGCTTATCC AGAGTATCTG
ACTTATGGCG ATATTGTAAT TCATTTTATA TCATCATATG ACCAGAATGA TGCAACTGAT
GGCTATATTC GTTTGGATAA TCCTAAAAGC TATGGATCCA ATCCAGCTCC CAAGGTTATG
GAAAATCGTA AGCTGGACGC CATTGAAGTG AGCATAGGCG CTACCCTGAT TCGCAAATAT
AGCTTTGCTT ATACCGTTAC TGCAGCTTCA TATAATTCCA GTCAATATGG TGGCATATAT
TATTCTGGTA CTATCAAGCT TAACTCCATC ATCCAAAAAG GTGCTGATGG CGTATCTTCT
TTACCAGCAA CAACTTTCAC TTATACGAAT AAACAGGTAT ATAGGCGTAC ATATGAAACC
ACCTATAGTG GCAATCCTGG CAATGCTGCT TCCTTATCAT GGCCATTCCT TACACAGGTT
AATAGCGGCT ATGGTGGGTA TGTGGCTTTT ACTTATGTCC AAACACCGGC TAACACCACA
TACGATACAT GGACTAGAGA ATGCGTTGCA ACTAAGACTG TAAACAGCGG TATAGGCGTG
AGTCAAGTTA CGAACTATGT TTATAGTGGC GGACCCTATT ACTCCGGTTA TGGCTGGGAT
GCTCCATTCA GAGGATTTAG TTCAGTCAGA GAGATACCCG AAACTAACAG ATTTATTAAT
CATAATTTTT ATACAACTGG TTCGATTCTA GCCGAAAAAT TGACCGGACT GGAATTTTCC
TACAACTATT GCAAGTATAA CGGCGCATTT AATGAAGAAT ACCCCGAAAG TGTTTCTTCA
GACTTTGAAT CTGGGGCATT GGATGAAATA GTACTACGAA TGGGTGGTGT ACTTAGCAAT
ACAATCTCCA GTTTGAATAA TCCGAATGCA GTAGCAATTG GGCAAGATGG ATATATCTAT
GTAGCAGATA CTAATGCGAA CCTAATCCGA AAGTATAATC CTAATGGTAT CCTTATGAGC
AGCTTCGGCA ATTCCTTAAA CCAACCTCAA GGCTTAGCTT TTACTTATGA TGGATATCTG
CTTGTTTCAA ATACCAATGC CAATACTATT CAAAAATACA CTATAGATGG GACTTTCGTA
AGCAATTTAA TTACTGGTCT GACTCGTCCC CAAGGTATTA CTGTAGCAAA AGGTGGAAAC
ATATATGTTG CAAATACTGG AGCCAATAAT GTCAAGATCT ATACAGCTAC AGGGAGCTTA
GTCAATACAA TTCTTTATTG GAATATGGGC ACACAGTCCC TAAACCAACC CCAGGGTGTA
GCTGTAACCA ACGATAACAT CCTATTTGTA GCTGACACAG GAAATAACCG AATTCATATT
TACTCAACTG TTAATAGTCC TACAGTTAGT TTTGCCAGCT TCAATACCTA CAAGTTTAAT
GGTGTGGATA CTGCATTTAA TGGACCCCAA GGGCTTTTCT ATTCGCAAAC AGGTTACTTA
TATGTTGCCG ATACAGGAAA CAATCTGGTC CATGAATATA TTCCGGGGAC TGGAATGACA
GATATACCAG AATGGGTAAG TAATATTGGA AGCGGGCTTA ATCAACCTCA ATCGGTAGCA
GTAGCTCCTA ATGGATATAT ATATGTTACA GATACTGGTG ATAATGAGAT TCATAAATAC
GAATACACTA TCCGAACTTG GATTATTCGG CTTGTAAAAT ACACGATTGG ATATAGTGGT
ACAGGCGGTT CCAATCACTA TAATCAGGAA CGATATGAAT ATGATAGCTA TGGAAATGTA
ATCAAAAAAT ATCTGGATGG TAATCCGAAT GCGATAGGTG ATGAATCTTA TATTGAATAT
GATTATTATC CAAATAGCAC AGACAATATA GTAGGATTAG TAGCCAGAGA GCGGACTTTT
GATAAAGATA GCAATCAAAT AACTGAAACC CGCTACTATT ATGACGGGAA CAATACTGAC
TACACTACCC CACCTACCCA AGGAAACCTT ACTCGTAAGG AATCCTTTAT AGATGGCTCG
AGCTCAATTA GCAATTATTA TACCTACGAT ACCTTTGGTA ATGTACTAAC AGAGCAGGAT
CCTAATGGAA ATATTACCAG TTGGGAATAT GAAACAACAT ATAATACTTA TCCTACAGTT
AAGACTTATC CAATAACCGG ATTGTCTGAA AGCTACACAT TTGATCCAGG TACTGATAAT
CTTTTAACTA AAACGGATGT TAACGGACAA ACAACCACCT GCTATTTTGA TACATTTAAG
CGCATTACCA AAGTAGTAAA ACCCGGTGAT ACGGAAACTC TTCCCAGTAT AGAGTACCAA
TATAATAACT GGGGTACTAT TAACCAGCAA CACCTCAAAA CTATTACCAG AATAAATTCA
ACAACCACTA TATGGCAAAG CCAATACTTT GACGGTATCG GTCGAGTAGT TCAGGTACAA
TCTCAGGGCG AAACCGGACG AACTATCATT GAACAAACTA CAAAATATGA TATCTGGGGC
CGAACTTCTC AAGTATATGT TCCTCAGGAT TATGCCTCTA CCTCAATAAA TGGTTATAAA
GCACCTGAAA CCGCATGGAA ATCTGTTTCA TATATCTATG ATATACTTGG CCGTTTGATA
ACCCAAATAA ATGCTGATGC CACAACAGTT AGTTATGATA GAGCAACAGT CAGTCTGCAG
GTACTGGTAA CTAATGAACG CGGTTATAAA CATCGCTATT ACTACGATTC ATACTTACGT
CTAACAAAAG TTGTGGAATA TGATGCTAAT AACGCTATTT ACGCTACCAC TGAATACACA
TATGATACAC TGGGTAATCT TACGCAGGTT AAGGATAATT CCAACAATAT AACAAGCATT
AGTTATGATT GGTTAAATCG TAAAACGGGT ATGATGGATC CTGATATGGG AAGCTGGGTC
TATGGCTATG ACAATAACGG TAACATCATC AGCCAAACTG ATGCCTTGAG CCATACTATT
AGCTATGCTT ATGATGCTTT GAATCGTCTC ACTTCCAAGA CATACCCCGC AGGTTTGGGT
ATGACCGATG TCAGCTATAA TTATGATAGC ACTGCCAATG GTAACTATGG CTTGGGTTTG
CGCACTAGTA TGACTGATGC TGTTGGTACA ATTGTTTGGA CTTATGATTC ATGGGGTAGA
AACATTGAAG AACTTCGGAC AATAGATTCC GTAGATTACG CTACTTCTTA TATTTATGAT
GGTTTAAACC GAATAACAAC AATCACATAT CCTACAGGAG AAGTTGTTAC CAATACCTAT
AATGGACGAG GTCTACCTTA TGCCCTGAGT GGTAGTACTA CAGGTAATTT GGTAACTAGT
ACGCTATACA ACCAACTGGC TCAGCCTAAA GAAATTAACT TTGGCAACAC CTTACGAACT
ACTTTTGGTT ACTATGGTCT GGGTGGTAGT TATGATACTA CCGGTGGTTA TTACGGTAAC
CTGTGGGAGA TAAAAACTTT ACCTCAGAGT GGTGGTAATG TTTTGCAGGA TACTCGCTAT
ACCTGGGATG CAGGTGATAA TGTATCCACT AGGCAAGATG TTTTATCAAG TCAGACTGAA
ACATTTACAT ATGATTTCCT GGGTCGTTTA ACTGCTGTTT CGGGTGCTTA TATTGCCTCA
TACAGTTATA ATCAGATAGG TAATATTGTA GCCATGAATG GTTCCTCATA CACTTATAGC
ACTCAGCCTC ATGCCGTAAC ACAAGTAGGC ACCACCAATT ATCTCTATGA TGCTAATGGC
AACATGACCA ATCGAGGCAC TCAAACCTTG ACTTGGGATC TTGAAAATAG GCCGGTTAGT
ATTACCGAAG GTGGCGATAT TACTACTTTT ATTTACGATG GTGATGGCAA TAGGATTAAA
CAAATAACCT CAATTGAAAC TATTTTGTAT ATAAACAAAT TTTATGAAAA AAACCTTGCC
ACAGATGAGG TAACCACTCG GTATTATTTT GGGGACACAA TGATGGCAGA ACGACAAGGT
ACAACTCTCA GGTATGTTCA TCAGGATAGT ATTAACAGCA CCAGTTTGGT CACTAGCAAT
ACTGGTACTG CGCTTGGCTC AACCAAGTAT TATCCGTATG GTGTTACCAG AAGCGGTTCT
GTTCCTGTTG ATGAGCAGTT TACCGGCCAG AAGCTTGATG GTACCGGGCT ATATTATTAT
AATGCTCGCT ATTATGATCC AACGCTTGGT AGATTTTTAA GTGCCGATAT ATACATTCAA
GATTTTACGA ATCCCCAGTG TTTAAACAGG TATTCTTACT GCCAGAATAA TCCTTTAAAA
TATACTGATC CCAGTGGACA TTTTGCTTGG TTTTTACCGA TTATCGGAGC AGCTATTGGA
GCTGTAGCAG GTGCGGTTAA AACCGTTGTA GATTGTGCAA TACACCCGGA GAAAGCGTTT
TCAACTAAAG AATTAATAGC CAATGTAGTT GGAGGAGCAG TTGCTGGTGC GCTAGCATTT
ACAGGGATTG GTATTTTAGC TGATATTACA GCAGAAGTTA GTACCGCATT TGTAGTAGTG
GCAAACCTAG CAGTATCAGA AGTATCTAAT GTGGTTGACT CGGTAATTGA ATCAGCTATG
ACGGGCGAAG ATTATACTAT TAATGATTTA ACTACAGATG TTATTTCTGG TGCTCTAACA
GGGCCTGCAG GAGTAGGTAT AGCTCCATCA CTTAATAAAA TAATAACAAA TAAGGAAGTA
GTTGCCGGTG TAATAACTTC CGGTTTTCAG ATTTTTACCA ATACAATAAG GTCTATTTTT
GGACTCACTA ATAACGTGAA TAGTGGAAAA AGTAAAAGGA ATAGCGATAT AAATTCTGGT
CTTGTGTTTT ATGGGACTAG CAGGCCTTCG GTGCAGTTAT TATAA
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| Protein sequence | MPVESSKFDK KTGILTAYLN HFSHYGELAN PLISGPGMVM DSQVGLQSGA SIYSYSIDTP
AGPGGFKPKI ELIYNSGSVD EMKNKRSLGS WVGIGWSLSL GRITHEPIAD KYFLEFNNGS
YELVTGDGIN YYTKPQEFLK ITRSGDIWEV YDKNGYYYEF GGSTGSTAVQ YLTSADGGSY
RWDLSIIRDT NGNEATVSYI QDIKGTSPDT WVRSAYPEYL TYGDIVIHFI SSYDQNDATD
GYIRLDNPKS YGSNPAPKVM ENRKLDAIEV SIGATLIRKY SFAYTVTAAS YNSSQYGGIY
YSGTIKLNSI IQKGADGVSS LPATTFTYTN KQVYRRTYET TYSGNPGNAA SLSWPFLTQV
NSGYGGYVAF TYVQTPANTT YDTWTRECVA TKTVNSGIGV SQVTNYVYSG GPYYSGYGWD
APFRGFSSVR EIPETNRFIN HNFYTTGSIL AEKLTGLEFS YNYCKYNGAF NEEYPESVSS
DFESGALDEI VLRMGGVLSN TISSLNNPNA VAIGQDGYIY VADTNANLIR KYNPNGILMS
SFGNSLNQPQ GLAFTYDGYL LVSNTNANTI QKYTIDGTFV SNLITGLTRP QGITVAKGGN
IYVANTGANN VKIYTATGSL VNTILYWNMG TQSLNQPQGV AVTNDNILFV ADTGNNRIHI
YSTVNSPTVS FASFNTYKFN GVDTAFNGPQ GLFYSQTGYL YVADTGNNLV HEYIPGTGMT
DIPEWVSNIG SGLNQPQSVA VAPNGYIYVT DTGDNEIHKY EYTIRTWIIR LVKYTIGYSG
TGGSNHYNQE RYEYDSYGNV IKKYLDGNPN AIGDESYIEY DYYPNSTDNI VGLVARERTF
DKDSNQITET RYYYDGNNTD YTTPPTQGNL TRKESFIDGS SSISNYYTYD TFGNVLTEQD
PNGNITSWEY ETTYNTYPTV KTYPITGLSE SYTFDPGTDN LLTKTDVNGQ TTTCYFDTFK
RITKVVKPGD TETLPSIEYQ YNNWGTINQQ HLKTITRINS TTTIWQSQYF DGIGRVVQVQ
SQGETGRTII EQTTKYDIWG RTSQVYVPQD YASTSINGYK APETAWKSVS YIYDILGRLI
TQINADATTV SYDRATVSLQ VLVTNERGYK HRYYYDSYLR LTKVVEYDAN NAIYATTEYT
YDTLGNLTQV KDNSNNITSI SYDWLNRKTG MMDPDMGSWV YGYDNNGNII SQTDALSHTI
SYAYDALNRL TSKTYPAGLG MTDVSYNYDS TANGNYGLGL RTSMTDAVGT IVWTYDSWGR
NIEELRTIDS VDYATSYIYD GLNRITTITY PTGEVVTNTY NGRGLPYALS GSTTGNLVTS
TLYNQLAQPK EINFGNTLRT TFGYYGLGGS YDTTGGYYGN LWEIKTLPQS GGNVLQDTRY
TWDAGDNVST RQDVLSSQTE TFTYDFLGRL TAVSGAYIAS YSYNQIGNIV AMNGSSYTYS
TQPHAVTQVG TTNYLYDANG NMTNRGTQTL TWDLENRPVS ITEGGDITTF IYDGDGNRIK
QITSIETILY INKFYEKNLA TDEVTTRYYF GDTMMAERQG TTLRYVHQDS INSTSLVTSN
TGTALGSTKY YPYGVTRSGS VPVDEQFTGQ KLDGTGLYYY NARYYDPTLG RFLSADIYIQ
DFTNPQCLNR YSYCQNNPLK YTDPSGHFAW FLPIIGAAIG AVAGAVKTVV DCAIHPEKAF
STKELIANVV GGAVAGALAF TGIGILADIT AEVSTAFVVV ANLAVSEVSN VVDSVIESAM
TGEDYTINDL TTDVISGALT GPAGVGIAPS LNKIITNKEV VAGVITSGFQ IFTNTIRSIF
GLTNNVNSGK SKRNSDINSG LVFYGTSRPS VQLL
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