| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1421 |
|---|
| Symbol | |
|---|
| ID | 3229258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | - |
|---|
| Start bp | 1291274 |
|---|
| End bp | 1292686 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637120981 |
|---|
| Product | PP-loop family protein |
|---|
| Protein accession | YP_182129 |
|---|
| Protein GI | 57233795 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG0037] Predicted ATPase of the PP-loop superfamily implicated in cell cycle control |
|---|
| TIGRFAM ID | [TIGR02432] tRNA(Ile)-lysidine synthetase, N-terminal domain
[TIGR02433] tRNA(Ile)-lysidine synthetase, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCGAAC GGGTAAGCAG ATATATAAAA CAACAGGGCA TGGTGTCAGA CGGAGATGAA
ATCCTGCTGG CGGTTTCTGG CGGGCCTGAT TCCGTTTGTA TGCTTTACAT AATGCATAAA
CTAAGCTGTG AAATGGGTTT CAGTTTGCGG CTGGCCCATT TGAACCACAG CCTGAGGGGT
GAAGAATCCG AGCGTGATGC CGCCTATGTG GCCGAACTGG CGGCTGCTTT GGGTGTACCC
CTTTGCCAGC AGAAAGTCAG TGTCAAGGCC TATCAGGCTG AACACCACCT GTCAACTGAA
GAAGCCGCCC GCGAAATGCG GTATGCCTTT CTTTGCCGGA CTGCTGCTGA GTATGGTTCG
GCGGCAGTGG CGGTGGGACA CACCACAGAT GACAATATTG AAACGGTTAT GCTTCATCTG
GTACGCGGCA GCGGAACCCG CGGGCTTCAG GGACTTAGGC CTGTTTTAAA CCGTACGGTA
GCCGGTGAAG GCTGTCTAAG GGTTATCCGC CCTCTGCTTG GCCTCAGCCG GGCTGAAACT
CAAAATTACT GCTGCGAAGC CGGGCTTTCA CCCGTACAGG ACGTAACTAA CCAGAGTACA
GACCTTTTAC GCAACCGTAT CCGCCTTGAG GTGCTGCCCA TGCTTAGGGG AATTAACCCC
GCCTTTGAAG AAACCATACT CCGCACTGCA TTTATTGCGG GTGAAGAAAT GGCCCTGCTG
GACGAAGTGA CTTCTCAAAT GAAGGCTGAG CTGGTAATCC GGCAGGACAA TGTGCTTATG
ATTGAAAAAA TAGAGATGCA GCGGCTTCAT CCGGCACTCA AAAGAAACCT GCTTAGGCAG
ATGCTGGAAG AACTGCTGGG CGGACTGAAG GATATTGAAG CCCGTCATAT AGAAAGCATT
ATCCAGACTC TGGACAAACC TGCCGGACGG CGAATAGACC TGCCTTACAA GCTGGTCTTT
CAGGTGGACT ATGAACATTA TTTGCTGGGC TGGGAGATTG ATGAACTCTG TCCGTACCCG
CCTTTTCAGG GGGAGTACCG GCTGGGAGTT GGCACTGAAA CTATTTTGGA CGGCTGGACT
GTAAAGACCG AAGTCTTGCC TTCCCCGGTA GGGCTGGATT TAAGTGAAAG TACTCTGGTG
GCCTATCTGG ATATGGACAA AGCCGGGAGT GACCTGGCTG TCCGCACCCG CACCGAAGGT
GACCAGTTTC AGCCGCTGGG CATGGAAGAA GCCAAAAGCC TGAAGGAATT TATGATAGAT
AATAAAATCC CCCGAAGCTG GCGGGCCAGA GTACCCCTGC TTTTTTCGGG CGCAGAAATA
CTCTGGCTGG TGGGCTACCG TATCGGCCAG TCTGCCAAGG TAGATGAAAA TACCCGCCGG
GTGCTTCGGG TGGAATTTAA ACTCCAAAAT TAA
|
|---|
| Protein sequence | MSERVSRYIK QQGMVSDGDE ILLAVSGGPD SVCMLYIMHK LSCEMGFSLR LAHLNHSLRG
EESERDAAYV AELAAALGVP LCQQKVSVKA YQAEHHLSTE EAAREMRYAF LCRTAAEYGS
AAVAVGHTTD DNIETVMLHL VRGSGTRGLQ GLRPVLNRTV AGEGCLRVIR PLLGLSRAET
QNYCCEAGLS PVQDVTNQST DLLRNRIRLE VLPMLRGINP AFEETILRTA FIAGEEMALL
DEVTSQMKAE LVIRQDNVLM IEKIEMQRLH PALKRNLLRQ MLEELLGGLK DIEARHIESI
IQTLDKPAGR RIDLPYKLVF QVDYEHYLLG WEIDELCPYP PFQGEYRLGV GTETILDGWT
VKTEVLPSPV GLDLSESTLV AYLDMDKAGS DLAVRTRTEG DQFQPLGMEE AKSLKEFMID
NKIPRSWRAR VPLLFSGAEI LWLVGYRIGQ SAKVDENTRR VLRVEFKLQN
|
|---|
| |