Gene DET1359 details

Gene Information

• Locus tag: DET1359
• Symbol: pilT-3
• ID: 3229355
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: +
• Start bp: 1229887
• End bp: 1231002
• Gene Length: 1116 bp
• Protein Length: 371 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637120921
• Product: twitching mobility protein
• Protein accession: YP_182070
• Protein GI: 57233890
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT
• TIGRFAM ID: [TIGR01420] pilus retraction protein PilT

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00791421
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACGTTA TAAAACTTAT CTACGAAGCC GAAGAAAAAA AAGGCTCTGA CCTGCATCTG 
GTAGCCCAAA GCCCGCCGCT GGTGCGGGTA AGAGGGGATT TGGAAGCCCT GAACTCTTAT 
GAACAGCTGC AGCCGGCAGA TATCAAAACC GCTTTTGAAC AGCTGACTAC CCATGAAGAA 
CGGGAAACTT TTTACAAGGA ATGGGAGCTG GATTTCGGCT ACTCACTGGA GGGAGTGGGA 
CGCCTAAGGT GCAATGCCGC CATGCAAAGG GGAGCCATAA GTCTGGCTAT CCGCCTGCTG 
CCGCCCAGCA TACCCACTAT CAGCGAGCTG GAATTACCGG ATATTTGTGA AAAACTGATT 
ACCAAACCCC GCGGCTTGGT GATTGTAACC GGACCTACCG GCAGCGGCAA GAGCACCACC 
CTGGCGGCTA TGATACAGCA CCTGAACAAC ACCGAAAACA AGCACGTGGT CACTATTGAA 
GACCCGATTG AATACGTTCA CCCCTGTATA AAATGCGCCG TCACCCAGCG CCAGCTTGGC 
TCAGACACCC TTTCCTTCGG CCATGCCCTG AAACACGTAC TCCGCCAGAA CCCTGACGTA 
ATCATGGTGG GTGAAATGCG TGACCTGGAT ACGGCCGCGG CAGTGCTGAC TATTGCCGAA 
ACAGGCCATC TGGTGCTCTC CACCTCCCAT GCACCCAGCG CCTATCAGGC CCTGGAGCGG 
ATTATAGACC TGTTCCCGCC CCATGAAAGG CATCTGGCCC AGACCCGTCT GGCCTCGCTG 
ATTGAGGGCG TTCTCTGCCA GACCTTAGTA CCCCGTGCCA ATAGCGACGG GCGGGTGGTG 
GCAGTGGAAA TAATGCTGGG CAGCCCGGCG GTCAGAAACC TTATCCGCGA GGGTAAGTTT 
TACCAGCTGC CGAATGTTAT CCGCACCAGC CGGGATGAGG GCATGATAAC CATGGACGAG 
GCTTTAGTGG AACTTTACCG CCAGCAGGTA ATCAGCCGGG AAGACCTGTT TAACTACTGT 
CAGGACGCAT CCGAGGTGGA AAAGCTGATA AGCAGCAGCT CCGCCAGCCA GAAACGCAAA 
AAGCTGGTGG AAAGCAGCAA GAGCCTGCTT TTTTAA 

 

Protein sequence

MDVIKLIYEA EEKKGSDLHL VAQSPPLVRV RGDLEALNSY EQLQPADIKT AFEQLTTHEE 
RETFYKEWEL DFGYSLEGVG RLRCNAAMQR GAISLAIRLL PPSIPTISEL ELPDICEKLI 
TKPRGLVIVT GPTGSGKSTT LAAMIQHLNN TENKHVVTIE DPIEYVHPCI KCAVTQRQLG 
SDTLSFGHAL KHVLRQNPDV IMVGEMRDLD TAAAVLTIAE TGHLVLSTSH APSAYQALER 
IIDLFPPHER HLAQTRLASL IEGVLCQTLV PRANSDGRVV AVEIMLGSPA VRNLIREGKF 
YQLPNVIRTS RDEGMITMDE ALVELYRQQV ISREDLFNYC QDASEVEKLI SSSSASQKRK 
KLVESSKSLL F