| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1358 |
|---|
| Symbol | |
|---|
| ID | 3229356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | + |
|---|
| Start bp | 1228413 |
|---|
| End bp | 1229870 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637120920 |
|---|
| Product | type IV pilus assembly family protein |
|---|
| Protein accession | YP_182069 |
|---|
| Protein GI | 57233891 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
|---|
| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.590178 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAA CAACTACGCT CTATATTGAA GATGCCGCAA TAAAGGTCCT TGTAAACAAC
GGTAAAAAGG TTGAAAAATG GGCCAGCGCC CCCCTTGAAG CCGGGCTGGT TATAGATGGC
TTGATTCAGG ATGAAACCAA GGTATCAGAG GAGATAAAAT CTTTATTTTC CCGTGAGAAG
ATACCCACCG GCAGAGTGAT AGCGGCCATG AGCGGCCTTA AATCTATCTT CCGGATTATC
AGCTTGCCGG CCGTACCAAA GAATATACTT GACGAAGCTA TTAAAAACGA AGCTAACCGG
GTAATTCCCA CCCCTATGGA CCAGAATTAC CTGTCTTACC AGGTACTTCC CTCCGCTCAG
GGTGAAGTAA AGGTATTTAT AGTAGCCCAC CCCAAAAACA CCACTGATTC GGTAATAAAA
ACCATAAACA AAGCCGGCCT CAGGCTGGAG GTACTGGATA TTGCCCCGCT GGCCCTTTGC
CGCTGTGCCA ATCTGGAAAA GGTTATTATT GTAAGCAACT GGCTGGATAA CGTGGATATT
GCCGTCATTA TAGGCCGCAT TCCGGAGGTT ATCCGCAGCC TGTCACTGCC GGTTGAAAGC
CAGTCTGTTG CCGAACGGAT AAGCACCATT GCCGAGGAAC TGAACCGGAC CATCACCTTT
TACAATTCCA GCCATGCTGA AAGCCCGCTG GATGAAAGCG TACCGGTACT GGTATCCGGC
GAACTGGCCA ATGAACAGGA TTCGTGGTCT TCTCTGCTGG ATGAGCTGAG CAACCAGATT
TCCAGCCTGC CCTCGCCCTT TATTGCCGGT GAAGGCTTTG ACCCCAGTGT TTATATTGTA
AATATGGGTA TGGCCCTCCG GGCGCTGCCG GCCGGAACTG AACACCAGAA TTCGCTAATC
AATATTAACG CCATGCCGGG TTTTTACAAA CCCAAAGGCA CTTCCCTGGC GTCTATCCTG
GTGCCCACAG TCATAGTTCT GCTGGTGGGC GGCCTGGTTT GGGGCTGGTT TTATATTGAT
GATATGAAGC AAAAGAACAA CGTCTTAGAG CCGCAGGTGC AGGAGCAGGA AGCTACCCTG
ATACAAAAAA GAGCCGAACT TTCAGCCCTT AACAGCCAGA TTGCGGAAAC CCAAAAATCT
CTGGACGCCG CCAACCCGGT GGTAACCGCC CTGAACGATA TGCTCTGGGA TATGTATCAG
GGAAGAGAGG CCATCACCGG GGATTATAAA GCCATTTACA ACCTGCACTC CAGCAATATT
GCCCTTTCTA CTATTGATTT TGACGGTGAA AGTATTACGG TTACAGGTTA CGGCCTGACC
AAGACGGCTG TGCTGGAATA TGCCGGCATA CTCCGCGGCA GCAACCGCTG GCTGGATGTA
GTGGTAATCA GCATGGACAA GATACTGACC GAAGACCCGA ATATGCCTAT ATACAGTTTT
AATTTCCTTT TGAAATAA
|
|---|
| Protein sequence | MAKTTTLYIE DAAIKVLVNN GKKVEKWASA PLEAGLVIDG LIQDETKVSE EIKSLFSREK
IPTGRVIAAM SGLKSIFRII SLPAVPKNIL DEAIKNEANR VIPTPMDQNY LSYQVLPSAQ
GEVKVFIVAH PKNTTDSVIK TINKAGLRLE VLDIAPLALC RCANLEKVII VSNWLDNVDI
AVIIGRIPEV IRSLSLPVES QSVAERISTI AEELNRTITF YNSSHAESPL DESVPVLVSG
ELANEQDSWS SLLDELSNQI SSLPSPFIAG EGFDPSVYIV NMGMALRALP AGTEHQNSLI
NINAMPGFYK PKGTSLASIL VPTVIVLLVG GLVWGWFYID DMKQKNNVLE PQVQEQEATL
IQKRAELSAL NSQIAETQKS LDAANPVVTA LNDMLWDMYQ GREAITGDYK AIYNLHSSNI
ALSTIDFDGE SITVTGYGLT KTAVLEYAGI LRGSNRWLDV VVISMDKILT EDPNMPIYSF
NFLLK
|
|---|
| |