| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1348 |
|---|
| Symbol | |
|---|
| ID | 3229374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | - |
|---|
| Start bp | 1218696 |
|---|
| End bp | 1219235 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637120910 |
|---|
| Product | ECF subfamily RNA polymerase sigma factor |
|---|
| Protein accession | YP_182059 |
|---|
| Protein GI | 57233909 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02952] RNA polymerase sigma-70 factor, TIGR02952 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0115454 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGACAG AGAAACGCCT GGTTGAGCTT GCTCAACAAA AAGACGAGCA TGCCTTTGCC
AGATTATATG AGGAATATTT CGATAAGATT TATCGCTATA TTGCCTTGAA AATCGGGAAT
AAAATGGAGG CCGAAGATTT GACCCAGCAG GTCTTTATGA ACATGCTCCG GTCTATATCT
TCCTTCAAGT GGCAGGATAA TACCCCTTTC TCTGCCTGGC TCTACCGTAT TGCCCATAAC
CAGATAGTGG ACTATCTGCG GAAGAGAAGC CGCCAGCCTG TGCTGGATAT AGAAGTAGTC
ACCCCGCTGG CCTGTGCCGA TGACCCGGTG GAAACTACCG AAGTAAATAT AGATTATGAA
AAGTTTGTGG AGGTATCCGG TAAACTTACA CCCGCCCAGC AGGAGGTCAT TTCCCTGCGG
TTTTCTTCGG ATTTGCCTAT TGCCGAAGTG GCCAAAATAA TGAATAAAAC TCCGGGTGCG
GTCAAGGCGC TGCAGCACAG TGCAGTGTCA TCACTCCGCC GAATGCTCTC TGGAGCGTGA
|
|---|
| Protein sequence | MQTEKRLVEL AQQKDEHAFA RLYEEYFDKI YRYIALKIGN KMEAEDLTQQ VFMNMLRSIS
SFKWQDNTPF SAWLYRIAHN QIVDYLRKRS RQPVLDIEVV TPLACADDPV ETTEVNIDYE
KFVEVSGKLT PAQQEVISLR FSSDLPIAEV AKIMNKTPGA VKALQHSAVS SLRRMLSGA
|
|---|
| |