| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1289 |
|---|
| Symbol | rph |
|---|
| ID | 3229379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | - |
|---|
| Start bp | 1176486 |
|---|
| End bp | 1177205 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637120851 |
|---|
| Product | ribonuclease PH |
|---|
| Protein accession | YP_182001 |
|---|
| Protein GI | 57233914 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0689] RNase PH |
|---|
| TIGRFAM ID | [TIGR01966] ribonuclease PH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGAG GTGATGGCCG CAACTTCAAC CAGCTAAGGC CGATAACAAT TACTCCCGGT
TTCCAGAGCT TTGCCGAGGG TTCGGTTTTG ATAGAGCAGG GCAAGACCCG GGTAATCTGC
TCGGTTAGTA TGGAAGATAA AGTCCCTCAG TTTCTGCGTA ACAGCGGTAC CGGCTGGGTT
ACGGCTGAAT ATTCCATGCT GCCCCGTTCT ACTGTTACCC GCACCCAGAG AGATTCATCT
GCCGGCAAAA TATCCGGCCG GAGCCAGGAA ATCCAGCGTC TGATAGGCCG CTCCCTGCGT
TCCTGCGTGG ATTTAGCGGC TCTGGGTGAG CGGTCTTTTA TTATAGACTG TGATGTTATT
CAGGCAGATG CCGGTACCCG CACCGCTTCC ATAACCGGTG CTTATATTGC CCTGTATCTG
GCATTTAAAA AGATGGTAGA TATGGGTATT CTCTCCAAAA TGCCCTTTAC TTCTCAGGTG
GCGGCGGTCA GCGTCAGTAT TTTCAAAGGC AATATTGTGC TTGACCCCTG TTACGATGAG
GATTTTCAGG CCGAAGTGGA TTTTAACCTG GTTATGAATG ACCGGGCTGA GTTTGTGGAA
ATACAGGGTA CGGCTGAGGG CAAAACTTTT TCCCGTGATA CCCTTGACCA GGTACTTAAA
CTGGGCGAAG CCGGTATCTG GCAGCTTTTT GATATTCAGA ATAGTATTAC CCGGCCGTAG
|
|---|
| Protein sequence | MQRGDGRNFN QLRPITITPG FQSFAEGSVL IEQGKTRVIC SVSMEDKVPQ FLRNSGTGWV
TAEYSMLPRS TVTRTQRDSS AGKISGRSQE IQRLIGRSLR SCVDLAALGE RSFIIDCDVI
QADAGTRTAS ITGAYIALYL AFKKMVDMGI LSKMPFTSQV AAVSVSIFKG NIVLDPCYDE
DFQAEVDFNL VMNDRAEFVE IQGTAEGKTF SRDTLDQVLK LGEAGIWQLF DIQNSITRP
|
|---|
| |