| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1281 |
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| Symbol | mfd |
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| ID | 3229394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides ethenogenes 195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002936 |
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| Strand | - |
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| Start bp | 1166595 |
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| End bp | 1170041 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637120843 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_181993 |
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| Protein GI | 57233929 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATCTTA GCGGTTTGCT GCCCCTTATA GACCAAAGCC CGTCATTTAA CAGCTTGTTT
GAAGCTCTGG ACAAAGGTGA GGCTGATATT TCTGTTTTGG ATGCGGGGCG GGGTTTCAGT
CTGGCAGCTG TATACCGTAA ACTCAAATGC CCCATGCTTA TTATTACCTC ACAGCCGGAG
CGGGCCAGGG AATTGCTGGT GCAGATAGCT GCTTATACCG GGGAAGAGCC GGGGTTTTTG
CCTGACCCAA GTTTGCTGCC GTACCAGCGG GCTGTTTCTG ACCGCAATAC CTCACTGGAA
AAGATGCGTC TGGCAGGTAT TTTGGGCGGG TTTATCCGCA GCCAAGACGC CCAGATAATA
GTCAGTGCCG TGCCGGCTCT TCTTCAGCGT TATGTATCAC CGGAAATATT CAAGCAGTCA
TTTTTGCAGG TCTGGACTGG TTTGGAAACC GAACCCCAGG ATCTGATACG CCGTTTTCAG
CAGCTGGGCT ACCGCCAGGA AAATATTGTG GAAATACCGG GTACATATTC CCGCCGGGGC
GGCATACTGG ATATTTTCCC CTATACCGAA GATAACCCGG TACGGCTGGA GTTTTTCGGC
AATACGCTGG AAAGCCTGCG TGTTTTTGAC CCCCAAAGCC AGCGTTCGGG CAAAAGCCTG
AATGAACTTA CCATAAGCCC GGCAAGTGAG CTGTTTCATC TGGGGCAGCT GCCCGTTAAG
GAACTTAACG CCAGGCTGGA GGCTTTGCTT ACTGATAACC TTAATCCCGA ATTCAGCCGC
ACTTTGTCCG CAGATATAGC CCGCCTTAAG GAAGGGCTTA AGCCCGAATA CCCTGATTTT
TTTGCCCCCC TGTTTAACAC CTCAAGTATA TTTGATTACC TGCCGGCAGA TGCGCTGGTG
GTGCTGGATG AACCAGCCTC CATAGAGCAG GCGGCCTCCC ATCTGGATAA AGAAGCCGAA
GAGCTGCGCT CTGACCGTTT GTCACAGGGT GAGCTGCCTT CGGTTTATCC CCGCCCCTAT
TTCAGCTGGG AAGAGATATC CGCCAAGCTG AAAACCAAAA AACGTCTTAT TATGGCCTCT
TTCGGGCGGG AAAGTGAGGC CTTAAAGCTG GATTTTGCCT CTCAGGATAA CTACGTGGGG
CGTTTATCCG CTTTGTATGA AAAACTGGGG GAGTTGAAAG GGCATACAGG CCGGGTAGTT
ATCATCAGCC ATCAGGCTGC CCGTCTGGCA GAGCTTCTAA AAGAGCATGG TATTTCAGCA
TCTGTCCAAA CAGATATTTT GAACCCCCCT CCCCCCTCCA GCCTTAGCCT GGTTCAGGGA
ATACTGGGCG GCGGCTGGAA TCTCAGCGGC AATGTTCACA TACTCACTGA TGCCGAACTG
TTCGGCTTTG TAAAAGAGCG GCGTCTGCCT TCCAAACGCC CGTCTGCCCG CAAGGGAGTG
GTGCTGGATA TAAAACCGGG TGAATTTGTG GTTCATATAG ACCACGGGGT GGCCTTGTTC
AGCGGGGTCA GCCACTTGAA CCGTGACGGC ATGGATAAAG AGTACCTGAT ACTCAATTAT
GCCGGCGGTG ACAAACTCTA CGTCCCCACA GACCAGATGG ACAGGGTAAA CCGTTTTATA
GGCAGCGGGG ATGAGCCGCC GTCTTTGCAC CGTTTGGGTA CTCAGGAATG GCAAAGGGCT
AAAGAAAAGG CCAGCGAATC TGCGGAGGAA ACCGCCCGTG AACTCCTTGA TATTTATGCC
AAACGTAAAA TGGCCAGCGG ATACCCGTTT TCCACGGATA CCGTCTGGCA GCAGGAAATG
GAGGCATCTT TCCCGTATCT GGAAACGCCT GACCAGCTGA AAGCCCTGTA TGATATCAAG
GCAGATATGG AAAACCCCCG CCCTATGGAC AGGCTTATAC TGGGGGACGT GGGTTATGGT
AAAACCGAAG TAGCCATACG GGCAGCCTTC AAGGCGGTTA TGGACGGCAA GCAGGTGGCA
GTATTAGTAC CTACTACCGT GCTTGCCCAG CAGCATTACA CCACTTTCCG TGAGCGTCTG
GCTACTTTCC CTGTCAAAAT AGAGGTGCTT AGCCGTTTTT GCAGCCCGTC TGAACAGAAA
ACCACGGTTG AAAATCTGGA AAGGGGTGAG GTGGATATCT GCATAGGTAC TCACCGCCTG
ATTCAGGCTG ATATAACGTT TAAAGATTTG GGGCTGGTCA TAATAGACGA AGAACAGCGT
TTCGGGGTAG CCCACAAGGA GTTTTTTAAG AAGCTGCGGG CTCAGGTAGA TGTGCTTACC
CTCAGCGCTA CTCCTATCCC CCGCACTTTG CACATGTCTT TGGTGGGGGT GCGGGATATG
AGTATTATAG AAACCCCGCC CGGTGAACGC CTGCCCATCA AAACCGTGGT AGCCGCTTTT
GATGAGAGGC TGATACGTGA GGCCATACTG CGGGAGATGG AAAGGAACGG GCAGGTATTT
TTTGTAAATA ACCGGGTGAT GGGTATAAAT CTGCTGGCAG AGCGTATTCA GCAGCTTGTC
CCCGAAGCCC GTATCGGCAT TGCCCACGGG CAGATGGCCG AAGAAAAACT GGCCGCTGTC
ATGGCTGATT TTGTGCGGCA CGAGCTGGAT GTGCTGGTAT GCACCACCAT TATAGAGTCC
GGGGTGGATG TACCTAATGC CAATACCCTT ATCATAAACC GGGCAGACCG CTTCGGGCTT
ACCCAGCTTT ACCAGCTGCG GGGGCGGGTG GGACGCAGTT CCCAGCTGGC TTATGCCTAT
TTCCTGTATG AAAAAGATAA ACGCCTGACA TCTGATGCCG AAAAACGCCT GAAAACTATT
TATGAGGCAG CCGAGCTTGG GGCAGGCTAC GGTATTGCCA TGAAAGATTT GGAAATACGG
GGTGCGGGCA CTTTGCTGGG GGTAAAACAG TCCGGATATA TAAATTCGGT CGGTTTCAAT
CTGTATACCC AGATGCTGTC AGAGGCTGTG GCCGGGCTGA AGGCCAAGGG CAGCGGGCTT
TCCAAAGAGG AAATACGTAT CCAGAATATG CCCGCCCCCA AGCTGGATTT ACCTTTAGAT
GCCTTTATAC CCGAATATTA TATTCAGGAT TTGGATTTGC GTTTATCTAT TTACCAGCAG
TTATCCGCCA TTACCAATCT GGCGGGAGTG TTGGAAAAGG AAAAAGAGCT GGCAGACCGG
TTTGGACAAA TACCGCCGGA GCTTGAAAAC CTGCTTTACT CCCTCCGCCT GCGTTTGCTG
GCCAAAAAAG CCCACGTGGA TACCATAGTG ACCGAAGGCA GCCAGATAGT GGTGCGGATG
CTGGGCGGGC TGATAATAAA CAAAACCTTG CTTGAGCCGC TGAGGGCAGG GGTGCTGGTA
GGGCGTAATC AGGTGTCTGT CCAGTATAAA AAGCTGGGTG ATAGCTGGAA AGAAGTGCTG
GAAGAGGTTG TTTGGCGGCT GGGCTAG
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| Protein sequence | MNLSGLLPLI DQSPSFNSLF EALDKGEADI SVLDAGRGFS LAAVYRKLKC PMLIITSQPE
RARELLVQIA AYTGEEPGFL PDPSLLPYQR AVSDRNTSLE KMRLAGILGG FIRSQDAQII
VSAVPALLQR YVSPEIFKQS FLQVWTGLET EPQDLIRRFQ QLGYRQENIV EIPGTYSRRG
GILDIFPYTE DNPVRLEFFG NTLESLRVFD PQSQRSGKSL NELTISPASE LFHLGQLPVK
ELNARLEALL TDNLNPEFSR TLSADIARLK EGLKPEYPDF FAPLFNTSSI FDYLPADALV
VLDEPASIEQ AASHLDKEAE ELRSDRLSQG ELPSVYPRPY FSWEEISAKL KTKKRLIMAS
FGRESEALKL DFASQDNYVG RLSALYEKLG ELKGHTGRVV IISHQAARLA ELLKEHGISA
SVQTDILNPP PPSSLSLVQG ILGGGWNLSG NVHILTDAEL FGFVKERRLP SKRPSARKGV
VLDIKPGEFV VHIDHGVALF SGVSHLNRDG MDKEYLILNY AGGDKLYVPT DQMDRVNRFI
GSGDEPPSLH RLGTQEWQRA KEKASESAEE TARELLDIYA KRKMASGYPF STDTVWQQEM
EASFPYLETP DQLKALYDIK ADMENPRPMD RLILGDVGYG KTEVAIRAAF KAVMDGKQVA
VLVPTTVLAQ QHYTTFRERL ATFPVKIEVL SRFCSPSEQK TTVENLERGE VDICIGTHRL
IQADITFKDL GLVIIDEEQR FGVAHKEFFK KLRAQVDVLT LSATPIPRTL HMSLVGVRDM
SIIETPPGER LPIKTVVAAF DERLIREAIL REMERNGQVF FVNNRVMGIN LLAERIQQLV
PEARIGIAHG QMAEEKLAAV MADFVRHELD VLVCTTIIES GVDVPNANTL IINRADRFGL
TQLYQLRGRV GRSSQLAYAY FLYEKDKRLT SDAEKRLKTI YEAAELGAGY GIAMKDLEIR
GAGTLLGVKQ SGYINSVGFN LYTQMLSEAV AGLKAKGSGL SKEEIRIQNM PAPKLDLPLD
AFIPEYYIQD LDLRLSIYQQ LSAITNLAGV LEKEKELADR FGQIPPELEN LLYSLRLRLL
AKKAHVDTIV TEGSQIVVRM LGGLIINKTL LEPLRAGVLV GRNQVSVQYK KLGDSWKEVL
EEVVWRLG
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