Gene DET1255 details

Gene Information

• Locus tag: DET1255
• Symbol: pilT-2
• ID: 3229444
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: +
• Start bp: 1141429
• End bp: 1142505
• Gene Length: 1077 bp
• Protein Length: 358 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637120817
• Product: twitching mobility protein
• Protein accession: YP_181967
• Protein GI: 57233979
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT
• TIGRFAM ID: [TIGR01420] pilus retraction protein PilT

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGATAGAGG TATATGAACT GCTGAAACTG GTAGTAGACA ACGACGCCTC AGATTTACAT 
ATCAAAGCCC CTACCGCACC GGTACTGCGC ATAAACGGGG ACCTAATACG CCAGATGCAA 
TACCCGCCAA TTACTCCGGA AGATGCCGAA CAAATTTTCA CCGCTATTAC TACCCCCCAC 
CAGCAGGAGA TATTTGCCGC CGAAAATGAA CTGGATTTCG TCTATTCGGT TACCAATCTG 
GCCCGCTTCC GGGTCAATGT ACTCCGCCAG AGGGGCAGCC TGAGTCTGGC TTTCAGGGTA 
GTCCCCTTTG CTATCCGCAA CATAGATGAA CTTAAGCTGC CGGTTATCCT TAAAAACCTG 
ATTATCCGCC CGCGCGGGTT GCTGCTGGTT ACCGGCCCTA CCGGCAGCGG CAAATCCACC 
ACCCAGGCCG CCATGATAGA GCACCTGAAC AACTGCCGCC GGTGCAACGT GATTACTATT 
GAAGACCCCA TAGAGTACCT GTTCCATGAC AACGAGTGTA TCATATCCCA GCGTGAGCTT 
GGGGGAGATA CCCATTCCTT TGCAACGGCC TTAAAACACG CCCTCCGCCA TGACCCCAAC 
GTAATAGTCA TAGGCGAAAT GAGAGATTTG GAAACCATAT CCACTGCCAT TGCCGCCGCC 
GAAACAGGCC ATCTGGTAAT AGGCACCCTC CACACTACCG ATGCCCCCCA GACGGTTGAC 
CGGCTGATAG ATATGTTCCC GCCCTCCCAG CAGCAGCAGA TACGCCTCCA GCTTTCCCAG 
GTACTGGAAG CCATTATCTC CCAGACCCTT ATTCCCAGAC TGGATAATAA AGGCCGGGTG 
GCCGCTTTTG AAATATTGAT TGCCACCAAT GCCGCCCGCA ACCTTATCCG CGAAGGTAAA 
ACGTTTGAAC TGCTGACCAT AATGCAACTG GGCAAAAATG AAGGTATGCA AACACTGGAT 
AATGAACTGA CCCGCCTGGC AAAAGACGGG GTAATAAGCA CCGAAAACGC TGTTTTGAAA 
AGCAGTAACC CCGAAAGACT GCGTAAGACC CTGTGCGGTG TGAACCGGGG GACTTAG 

 

Protein sequence

MIEVYELLKL VVDNDASDLH IKAPTAPVLR INGDLIRQMQ YPPITPEDAE QIFTAITTPH 
QQEIFAAENE LDFVYSVTNL ARFRVNVLRQ RGSLSLAFRV VPFAIRNIDE LKLPVILKNL 
IIRPRGLLLV TGPTGSGKST TQAAMIEHLN NCRRCNVITI EDPIEYLFHD NECIISQREL 
GGDTHSFATA LKHALRHDPN VIVIGEMRDL ETISTAIAAA ETGHLVIGTL HTTDAPQTVD 
RLIDMFPPSQ QQQIRLQLSQ VLEAIISQTL IPRLDNKGRV AAFEILIATN AARNLIREGK 
TFELLTIMQL GKNEGMQTLD NELTRLAKDG VISTENAVLK SSNPERLRKT LCGVNRGT