| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET1035 |
|---|
| Symbol | |
|---|
| ID | 3229679 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | + |
|---|
| Start bp | 938654 |
|---|
| End bp | 940018 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637120599 |
|---|
| Product | tryptophan synthase subunit beta |
|---|
| Protein accession | YP_181751 |
|---|
| Protein GI | 57234212 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1350] Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) |
|---|
| TIGRFAM ID | [TIGR01415] pyridoxal-phosphate dependent TrpB-like enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00331914 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAAA CCAAGTTTCT ACTGCAAGAA AAGGATATGC CCCAGGTCTG GTACAATATC
CAGCCTGATT TACCCGTACC GCTGCCCCCG GTTCTGCACC CGGGTACCGG CCAGCCGGTA
ACTCCGGCTG ATATGGAAGC CATATTCCCC ATGAGCCTTA TCATGCAGGA GTTCAGCCCC
GAAAGGCATA TACCCATCCC CGAAGAACTG CTGGAAATAT ATAAAATCTG GCGGCCTACC
CCCCTTTACC GCGCCCACAG GCTGGAAAAG GCCTTGCAGA CCCCGGCCAA AATCTTTTAC
AAACTGGAAG ATGTCAGCCC GGCCGGTTCT CACAAACCCA ATACTGCTCT GGCTCAGGCC
TATTACAATA AAAAAGCCGG CATAAAGAGG ATTTCCACCG AAACCGGCGC CGGACAGTGG
GGCTCTTCGC TGGCCATGGC CTGCAAATTT TTTGATATAG AGTGCAAGGT CTATATGGTA
AAGGTAAGCT ACAATATGAA GCCTTACCGC CGGGTCATGA TGGAAACCTG GGGTGCGTCA
GTTGTACCCA GCCCCAGCCC GGATACCAAG ATAGGCCGTG AAATACTGGA ACGTGACCCC
GAATGCCCCG GCAGCCTGGG TATTGCTATA AGCGAAGCGG TGGAAGACGC CGTAACCCAT
CCCGGCACCA AGTATGCTTT GGGCAGCGTA CTTAACCATG TTCTGCTGCA TCAGACTATT
ATCGGTCAGG AAGCCAAAAA ACAGATGGCT ATGGCAGACT GCTACCCGGA TATAGTTATT
GGCTGCGTAG GCGGCGGCTC TAACTTCGGC GGTATTGCCC TGCCCTTTGT AGAAGACAAG
CTCAATGGCA CTCACAAGGA TACCCGCATT ATGGCTGTTG AACCTGCCAG CTGCCCTTCA
CTGACCAAGG GGCTGGATGC CTATGACTTC GGTGACGAAG CCGGCATGAC CCCCATGATG
AAAATGTTTA CTCTGGGACA TCAGTTTATG CCGCCTCCGG TACATGCCGG CGGTCTGCGC
TATCACGGTA TGTCTCCTTT GCTGTCTCAC CTCAGCCGCC TGAACCTGAT TGAGGCCACA
GCGGTCAACC AGATAGAGAC CTTTGAGGCA GGCATACAGT TTGCCCAGAC CGAAGGTTTC
ATAAGCGCAC CCGAAACCAA CCATGCCATA AGGGCGACTA TTGATGAAGC CCTGAAATGC
CGCGAAACCG GCGAAGCCAA GACTATACTC TTCTGCCACA GCGGCCATGG CCACGTAGAC
ATGGCTTCCT ATGACCTGTA CCTGCGGGGC AAGCTGAGCA ATTATGAATA CCCTGCCGAA
CTGGTTAAAG AAGCCCAGAA AGGTTTGCCC AAAGTAAGCG CTTAG
|
|---|
| Protein sequence | MAQTKFLLQE KDMPQVWYNI QPDLPVPLPP VLHPGTGQPV TPADMEAIFP MSLIMQEFSP
ERHIPIPEEL LEIYKIWRPT PLYRAHRLEK ALQTPAKIFY KLEDVSPAGS HKPNTALAQA
YYNKKAGIKR ISTETGAGQW GSSLAMACKF FDIECKVYMV KVSYNMKPYR RVMMETWGAS
VVPSPSPDTK IGREILERDP ECPGSLGIAI SEAVEDAVTH PGTKYALGSV LNHVLLHQTI
IGQEAKKQMA MADCYPDIVI GCVGGGSNFG GIALPFVEDK LNGTHKDTRI MAVEPASCPS
LTKGLDAYDF GDEAGMTPMM KMFTLGHQFM PPPVHAGGLR YHGMSPLLSH LSRLNLIEAT
AVNQIETFEA GIQFAQTEGF ISAPETNHAI RATIDEALKC RETGEAKTIL FCHSGHGHVD
MASYDLYLRG KLSNYEYPAE LVKEAQKGLP KVSA
|
|---|
| |