Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DET1025 |
Symbol | rnc |
ID | 3229696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides ethenogenes 195 |
Kingdom | Bacteria |
Replicon accession | NC_002936 |
Strand | + |
Start bp | 931014 |
End bp | 931727 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637120589 |
Product | ribonuclease III |
Protein accession | YP_181741 |
Protein GI | 57234229 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00427221 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAGATT TAACTGAACT TGAAAAATCC CTGGGAGTAA AGTTTGAAAA TCTGTCCCTT TTGGAGCAGG CGCTCATACA TACTTCATGG GTAAACGAAA ACCCAAACCA CTTAAGCGGC TCTAACGAAA GAATGGAATT TCTGGGTGAT GCCGTACTGG GTGTAATATT TGCAGACCGG CTTTACCATG ATTTCCCTGA TATTCAGGAA GGTGACCTGA CCCGTTTCCG TTCCCTGCTG GTGCGGCGGG AAAGTCTGGT AAGAGTAGCT TTGGGCATCA ATCTTGGCAA ATACCTCTAT CTGGGGCGGG GTGAAGATGC CTCCAAGGGG CGTTTTAAGC CGGCCAATCT GGCGGGTGCA TTTGAAGCCG TGCTGGCAGC CATATATCTG GATAAAGGGA TAGATGCAAC CAGGGAAGTT ATCTTCCGCC TTTTTAAGAC CGAAATGGAA CGGGTGCAAA CCCTGAGTTC CAACATTGAT TACAAATCAC GCCTGCAGGA GCTTGTGCAA GCCCAATTTC AGCTTACACC CCGCTACCGT ATTATAGATT TCAGCGGGCC GGAACATAAC CATCTGTTTA TAGCCGAAGT CTATACCGAA GACAAAGTGC TGGCGGAAGG TTCGGGGCGC AGCAAAAAAG AAGCCGAAAC CAGCGCCGCT AAAGAAGCCT TGCAGCAGTT TGAAAACAGC TTTACAGCCG AAGATAACAT TTGA
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Protein sequence | MLDLTELEKS LGVKFENLSL LEQALIHTSW VNENPNHLSG SNERMEFLGD AVLGVIFADR LYHDFPDIQE GDLTRFRSLL VRRESLVRVA LGINLGKYLY LGRGEDASKG RFKPANLAGA FEAVLAAIYL DKGIDATREV IFRLFKTEME RVQTLSSNID YKSRLQELVQ AQFQLTPRYR IIDFSGPEHN HLFIAEVYTE DKVLAEGSGR SKKEAETSAA KEALQQFENS FTAEDNI
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