| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0922 |
|---|
| Symbol | pilT-1 |
|---|
| ID | 3229775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | + |
|---|
| Start bp | 844253 |
|---|
| End bp | 845344 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637120486 |
|---|
| Product | twitching mobility protein |
|---|
| Protein accession | YP_181647 |
|---|
| Protein GI | 57234308 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.987668 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCAG ACGAATTATT AAAAATAGCA GTAGAAAAAA AGGCTTCAGA CCTCCACCTG
AGAGTGCCGA ACCCGCCTGT ACTCAGAATA GACGGCGCCC TTAAACCCCA GACAGACTGG
CCTGTTTTAT ACAACAAGGC CATTGAGCAG ATACTGGAAG AGATAACCAC CCCCGAACAG
CGTGAAATAT TTTATGCCGA AAAAGAGCTG GACTTTGCCT ACAGTGTAGC CGGGGTAGCC
CGCTTCAGGG TAAACGTGAT GAAACAGCGC GGCTCTATCA GCATTGCCTT CCGCCAGGTG
CCTTTTGAGA TACGTTCTAT AGATGAACTG GGTGTACCCA AAATCTGCAA AGAGCTTATC
CTGAAACCGC GCGGCCTTAT TCTGGTAACC GGGCCAACCG GCAGCGGCAA ATCCACCACC
ATGGCCGCCA TGGTAGACCA CCTGAATAAT ACTGATTCGC GTAACGTCAT TACCATAGAA
GACCCCATTG AGTATCTTTA TACCAATAAC CGCTGCATTA TTGCCCAGAG AGATTTGGGT
GACGATACCA AGTCTTTTTC CACTGCCCTG AAATATGCCC TCCGGCATGA CCCTGACGTA
ATACTGGTGG GTGAAATGCG TGACCTGGAG ACTATTTCCA CCGCCATCAG CGCCGCCGAA
ACAGGCCATC TGGTAGTGGG TACTTTGCAC ACTACCGATG CCCCCCAGAC TATAGACCGC
TTAATAGATA TATTCCCTCC TGACCAGCAG CAGCAGATAC GCATGCAGCT GTCTCTGGTT
ATTGAGGCGG TACTGGTACA GACGCTGCTG CCAAAACGGG AAGGCAAAGG GCGGGTGGCC
GCTTTTGAAA TAATGGTAGC CAATACCGCC GTACGCAACC TGATACGTGA CAAAAAGGCC
CATGAACTGC ATAACGTAAT GCAGCTGAGT GCCAAAGACG GTATGCAGAC CCTTGACCAG
TCTTTGGCAG GTCTGGTACG CCAGAATATA GTTTCGCTGG AAGAAGCCCT GTTAAAAAGC
AGTAACCCGG AAAGACTGCA AAAATTGCTG GCATACCAGC AAACCCAGCA GACCAAGCCC
CACCAGTTTT AA
|
|---|
| Protein sequence | MRADELLKIA VEKKASDLHL RVPNPPVLRI DGALKPQTDW PVLYNKAIEQ ILEEITTPEQ
REIFYAEKEL DFAYSVAGVA RFRVNVMKQR GSISIAFRQV PFEIRSIDEL GVPKICKELI
LKPRGLILVT GPTGSGKSTT MAAMVDHLNN TDSRNVITIE DPIEYLYTNN RCIIAQRDLG
DDTKSFSTAL KYALRHDPDV ILVGEMRDLE TISTAISAAE TGHLVVGTLH TTDAPQTIDR
LIDIFPPDQQ QQIRMQLSLV IEAVLVQTLL PKREGKGRVA AFEIMVANTA VRNLIRDKKA
HELHNVMQLS AKDGMQTLDQ SLAGLVRQNI VSLEEALLKS SNPERLQKLL AYQQTQQTKP
HQF
|
|---|
| |