Gene DET0788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDET0788 
SymbolsbcD 
ID3229869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides ethenogenes 195 
KingdomBacteria 
Replicon accessionNC_002936 
Strand
Start bp725205 
End bp726452 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content49% 
IMG OID637120352 
Productnuclease SbcCD, D subunit 
Protein accessionYP_181520 
Protein GI57234402 
COG category[L] Replication, recombination and repair 
COG ID[COG0420] DNA repair exonuclease 
TIGRFAM ID[TIGR00619] exonuclease SbcD 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAAATCC TCCACTTTGC AGACCTTCAC ATAGGGGTGG AGAATTACGG CCGTTTTGAC 
AGTGCAACCG GGCTTTCCTC CCGGCTGGCT GATTTCTTGG CTGCTTTTGA CCGTTTGGTG
GCTTATGCCA TTGAGAACAA AGTGGATTTG GTGGTTTTCA GCGGTGATGC TTACAAAAGC
CGTGACCCTT CCCAAACTCA GCAGCGGGAG TTCGCCCGTC GGATAAGTAC CCTGGCAAAT
AACGGCATAC AGGTATTCCT GCTAGTAGGA AACCATGACC TGCCGAATGC CACCGGCAGG
GCTACCACAA CTGAAATATT TGACACACTT AATATTGCCA ATGTGCATGT TTCCGCCAAG
GCGGAAGTGC GGCTGATAAA TACCCGCAGC GGTCTTATTC AGGTCGCCTC CCTGCCGTGG
TTACGCCGTT CCTCTGTTCT TTCGGTCTCA AACCAGAAAG AAGAAAAAAG CCTGAGCATT
GAGGAACTGA ACCAGAGGGT GGAACATTAT CTGGCCGGTA TTATAGAAAA TCTGGCAGGC
CAGCTTGATA AAGATATCCC CGCCATCCTT TCCGCCCATC TTTCGGTCAA TACCGCCAAA
CTGGGCTCCG AGCGGAATAT CTCAATAGGT CACGAGCCTA CAGTTATGTT AAGTAATATT
GCCAACCCTG CTTTTGATTA TATTGCTCTG GGGCATATCC ATAAGCAGCA GGTATTGTCT
TCTTCCCCTC CGGTAGTGTA TCCCGGCAGT CTGGAAAGGC TGGATTTCGG TGAGGAAAAA
GACGATAAAG GTTTTTATCT GGTAGAGATA GACTCCCTCA GCCGTAAAAC TGAATTTGAG
TTTATAAAAC TGGAAGGCCG CCGTTTTTTG ACTATAGAGC ATACTGTAAC GGCAGACAGC
CTTGACCCTA CTCAGGAAGT AATAAATATA TTACAATCAC GCCAGCCGGA AATAAAAGAT
GCTATAGTCC GCCTGAAACT GGAGCTGCCG GCAGAGATTG GCGGGCAGCT GCGGGATAAT
GATATACGGG AAGCTTTGCG TGAGGCCCAT AACTTCACTG TTTCCAAAAA TTTCACCCGC
TCAAGCCGCC AAAGAGAGGG CGGTTTCAAA GCGGAGGGGC TTGACCCTGT TCAGGCTTTG
GAACATTATT TGGATGCCAG GCAGACTTCG GCACAGGAGA AAAAGACTCT GCTGGAATAT
GGGCGCAGGC TGTATACTTC ACTGGATAGC AAGCAGACAA AAGTTTAA
 
Protein sequence
MKILHFADLH IGVENYGRFD SATGLSSRLA DFLAAFDRLV AYAIENKVDL VVFSGDAYKS 
RDPSQTQQRE FARRISTLAN NGIQVFLLVG NHDLPNATGR ATTTEIFDTL NIANVHVSAK
AEVRLINTRS GLIQVASLPW LRRSSVLSVS NQKEEKSLSI EELNQRVEHY LAGIIENLAG
QLDKDIPAIL SAHLSVNTAK LGSERNISIG HEPTVMLSNI ANPAFDYIAL GHIHKQQVLS
SSPPVVYPGS LERLDFGEEK DDKGFYLVEI DSLSRKTEFE FIKLEGRRFL TIEHTVTADS
LDPTQEVINI LQSRQPEIKD AIVRLKLELP AEIGGQLRDN DIREALREAH NFTVSKNFTR
SSRQREGGFK AEGLDPVQAL EHYLDARQTS AQEKKTLLEY GRRLYTSLDS KQTKV