Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DET0788 |
Symbol | sbcD |
ID | 3229869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides ethenogenes 195 |
Kingdom | Bacteria |
Replicon accession | NC_002936 |
Strand | + |
Start bp | 725205 |
End bp | 726452 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637120352 |
Product | nuclease SbcCD, D subunit |
Protein accession | YP_181520 |
Protein GI | 57234402 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAATCC TCCACTTTGC AGACCTTCAC ATAGGGGTGG AGAATTACGG CCGTTTTGAC AGTGCAACCG GGCTTTCCTC CCGGCTGGCT GATTTCTTGG CTGCTTTTGA CCGTTTGGTG GCTTATGCCA TTGAGAACAA AGTGGATTTG GTGGTTTTCA GCGGTGATGC TTACAAAAGC CGTGACCCTT CCCAAACTCA GCAGCGGGAG TTCGCCCGTC GGATAAGTAC CCTGGCAAAT AACGGCATAC AGGTATTCCT GCTAGTAGGA AACCATGACC TGCCGAATGC CACCGGCAGG GCTACCACAA CTGAAATATT TGACACACTT AATATTGCCA ATGTGCATGT TTCCGCCAAG GCGGAAGTGC GGCTGATAAA TACCCGCAGC GGTCTTATTC AGGTCGCCTC CCTGCCGTGG TTACGCCGTT CCTCTGTTCT TTCGGTCTCA AACCAGAAAG AAGAAAAAAG CCTGAGCATT GAGGAACTGA ACCAGAGGGT GGAACATTAT CTGGCCGGTA TTATAGAAAA TCTGGCAGGC CAGCTTGATA AAGATATCCC CGCCATCCTT TCCGCCCATC TTTCGGTCAA TACCGCCAAA CTGGGCTCCG AGCGGAATAT CTCAATAGGT CACGAGCCTA CAGTTATGTT AAGTAATATT GCCAACCCTG CTTTTGATTA TATTGCTCTG GGGCATATCC ATAAGCAGCA GGTATTGTCT TCTTCCCCTC CGGTAGTGTA TCCCGGCAGT CTGGAAAGGC TGGATTTCGG TGAGGAAAAA GACGATAAAG GTTTTTATCT GGTAGAGATA GACTCCCTCA GCCGTAAAAC TGAATTTGAG TTTATAAAAC TGGAAGGCCG CCGTTTTTTG ACTATAGAGC ATACTGTAAC GGCAGACAGC CTTGACCCTA CTCAGGAAGT AATAAATATA TTACAATCAC GCCAGCCGGA AATAAAAGAT GCTATAGTCC GCCTGAAACT GGAGCTGCCG GCAGAGATTG GCGGGCAGCT GCGGGATAAT GATATACGGG AAGCTTTGCG TGAGGCCCAT AACTTCACTG TTTCCAAAAA TTTCACCCGC TCAAGCCGCC AAAGAGAGGG CGGTTTCAAA GCGGAGGGGC TTGACCCTGT TCAGGCTTTG GAACATTATT TGGATGCCAG GCAGACTTCG GCACAGGAGA AAAAGACTCT GCTGGAATAT GGGCGCAGGC TGTATACTTC ACTGGATAGC AAGCAGACAA AAGTTTAA
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Protein sequence | MKILHFADLH IGVENYGRFD SATGLSSRLA DFLAAFDRLV AYAIENKVDL VVFSGDAYKS RDPSQTQQRE FARRISTLAN NGIQVFLLVG NHDLPNATGR ATTTEIFDTL NIANVHVSAK AEVRLINTRS GLIQVASLPW LRRSSVLSVS NQKEEKSLSI EELNQRVEHY LAGIIENLAG QLDKDIPAIL SAHLSVNTAK LGSERNISIG HEPTVMLSNI ANPAFDYIAL GHIHKQQVLS SSPPVVYPGS LERLDFGEEK DDKGFYLVEI DSLSRKTEFE FIKLEGRRFL TIEHTVTADS LDPTQEVINI LQSRQPEIKD AIVRLKLELP AEIGGQLRDN DIREALREAH NFTVSKNFTR SSRQREGGFK AEGLDPVQAL EHYLDARQTS AQEKKTLLEY GRRLYTSLDS KQTKV
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