Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DET0740 |
Symbol | dapF |
ID | 3229959 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides ethenogenes 195 |
Kingdom | Bacteria |
Replicon accession | NC_002936 |
Strand | - |
Start bp | 681298 |
End bp | 682152 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637120304 |
Product | diaminopimelate epimerase |
Protein accession | YP_181475 |
Protein GI | 57234492 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00112553 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTA CTAAGTTACA AAGTGTAGGT AATGACTTTG TGCTGATAGA CCCTCAGGGT GAGGATAAAG ACTGGTCAAA ACTGGCACTC CACATGTGCC ACCGGCATTT CGGTGCCGGG GCTGACGGGC TGATGCTTAT TTTACCTTCA GCCAAAGCTG ATTTCCGTAT GCGGATATTT AACGCGGACG GCTCTGAGGC CGAAATCTGC GGCAACGGTC TGCGTTGTCT TATTCATTAC ATAGCTGCCA ACAATCTGAT TGGCAACAGG GATGAACTAA GCATTGAGAC TCTGGCAGGC ATACGCAATG CCCAGATATT TGCCGACGGG CGGATACGTA CCACCATGGG TAAACCCATG TTTGAAGCCC ACCAAATACC TGTTGCCGCC GAACCGGACC CCAAATACTA TAACGGGCAG CTTATTTCTG ACTTTCCGTT AAATATCAAT AACCGCAGAT TACTCCTTTC CCTGGTATCC ATGGGCAACC CCCATGCCAT ACACTTTTGC ACCAAATCTG TAGAAGAATT CCCCCTAGGT GAAGTTGGCC CACTGGTGGA AACTCATAAA GCCTTTCCCA AACGCACTAA CTTTGAGGTT GCAAACATTC TGGACAGTGA ACATATCAAA GTACGTGTTT GGGAACGGGG GGTAGGGGAG ACTCTGGGCT GCGGCAGCGG AGCATCTGCC GTGGCGGTTG CCGCCCAAAT ACTTGGGTAT GTCGGAAAAT TTGTTTACAT AAAGTTACCG GGCGGAACAC TGGGCGTTGA GTGGGATGGC CATAATGACG TCTATCTGAC CGGAAAAGCT GAAATTATAT ACACGGGAGA ATGGTTGAAA GATGAAACTG TCTAA
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Protein sequence | MKFTKLQSVG NDFVLIDPQG EDKDWSKLAL HMCHRHFGAG ADGLMLILPS AKADFRMRIF NADGSEAEIC GNGLRCLIHY IAANNLIGNR DELSIETLAG IRNAQIFADG RIRTTMGKPM FEAHQIPVAA EPDPKYYNGQ LISDFPLNIN NRRLLLSLVS MGNPHAIHFC TKSVEEFPLG EVGPLVETHK AFPKRTNFEV ANILDSEHIK VRVWERGVGE TLGCGSGASA VAVAAQILGY VGKFVYIKLP GGTLGVEWDG HNDVYLTGKA EIIYTGEWLK DETV
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