| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0717 |
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| Symbol | topA |
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| ID | 3229934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides ethenogenes 195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002936 |
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| Strand | - |
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| Start bp | 662943 |
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| End bp | 665054 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637120281 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_181458 |
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| Protein GI | 57234467 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0604415 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAAA AACTTGTTAT CGTTGAGTCA CCTGCCAAAG CCCGTACTAT CAGCAAAATG
CTGGGCAAAG ACTTTAATAT TATGGCCACC ATGGGGCATA TACGGGATTT ACCCAAAAGC
ACCCTGGGCG TAGATGTTGA AAACAGTTTT ACCCCCAAGT ATGTCTCCTT AAAAGCCAAG
GCCAAGGTCA TAAAGGAACT CAAAGACGCA GTTAAAAATT CCAAGGCAAT CTACCTGGCT
ACCGACCCTG ACCGCGAAGG TGAGGCTATT GCCTGGCATA TATCCGAAGT TACCAAAGCA
AATCTGGCTA AGCCCAAACG GGTAGTCTTT CACGAGATTA CCAAAGAAGC CATAGATAAG
GCTTTTAAAA ACACCCGCGA ACTGGATATG GATTTGGTAA ATGCCCAGCA GGCCCGGCGG
GTGCTTGACC GGCTGGTAGG TTACAAATTA AGCCCGCTGC TCTGGCGAAA GGTACAACGG
GGGCTTTCAG CCGGGCGGGT GCAGTCTGTT TCCCTGAAAA TAATTGTTGA CCGCGAACGG
GAAATAGAAA AATTTGTATC TGCCGAATAC TGGAATATAG AAGCCCTGCT GAATAAAAAG
GTTAAATCAG CCGCTTTCAA AGCTTCTCTG GCAGGTTATG TAACCAAAGG CAAACTGGAG
ATACATAACG AATCTGAAGC CGAACAAATT AAAAAAGAAC TGGAAGTATC TGACTATCAG
GTACTGAAGA TAAAAAAGAA ATCAAATCTC AGGCAGTCCC CCGCCCCCTT TATTACCAGC
ACCCTTCAGC AGGAGGCCTG GCGGAAGCTC CATTTTTCAG CCAAGCAAAC CATGGTGATA
GCCCAGCAGC TGTATGAAGG CCTGAATATA GAGGGCGAAG GGGAAGTGGG TCTTATTACC
TATATGCGTA CTGACTCTAC CAACGTAGCC CGTACCGCCG TAGCCGAAAC CCGTGATTAT
ATAAGTGAAA AATACGGCCC GGCTTACCTG CCCAAACAGG CCAGAGTATT TTCAAGCAAG
GTTAAGGGAG CACAGGAAGC CCATGAAGCT ATCCGCCCTA CCCGTATAAT CCGCACCCCT
GACTTGATAA AAAAGAGCTT GTCTACCGAA CAGTTCAAGC TTTACCAGCT TATCTGGCAG
CGTATGATGG CCAGCCAGAT GAGCCCGGCC GTCTTTGATA ATACTACAAT AGACATAGAG
GCCAAACACC AGCCCTCAAA AACCCGCTAC CTGCTTAGAA CCACCAGTTC GGTAAATACT
TTTCCGGGTT TTACCATTGT ATATATAGAA GGCAAGGACG AAGATGAGGA AGCGGCGCAG
TCCAGCCTAC CGCCCATGGA AGAAGGCGAA GAGCTGAAGC TGAAAAGTCT GGAAGCCAGC
CAGCATTTTA CCCAGCCTCC TCCCCGTTAT ACAGAGGCCA CGCTAATCAA GGCACTGGAG
CAATACGGCA TAGGCCGCCC CAGCACCTAC GCCCCCACTA TTTCCACAAT ACAGGAACGG
GAATACATTA CCAAGCTCAA AGGCAGCCTG AAACCCAGTG AACTGGGAAT GCTGGTAAAT
GACCTGCTGG TAGAGTATTT CCCGGATATT ATCGGTATAG ATTTTACGGC CGCCATGGAA
ACCGAACTGG ACAAAATAGC TACTGAAAAA CTGGACTGGG TGCCTATAAT CAGGCGGTTC
TACGAACCTT TTATAAAAGA GATAGAAGCC GCCAGTGAAA AAATTGAAAA AATTAAACCG
CCGGAAGAAG AGCTGGACGA GCTTTGCCCC GAATGCAATG CCAAGCTGGT AGTAAAACGG
GGGCGTTTCG GTAAATTTAT TGCCTGCTCG CGTTATACCA AAGAAGAGGG CGGCTGCCGT
TATACCCGCT CATACCAGAT AAAAACAGGT GCCAAATGCC CTGAGTGCAA TTCGGATATA
GTTGAAAAAT ACAGCAAAAA GGGCAAGATA TTTTACGGCT GTGCCGGTTA CCCGAACTGC
AAATTTGTAT CTTTCTACAA GCCGCTAAGC AAACCCTGCC CGGAATGCGG CGCCCTTATG
ATCAAGAGCG GCAAGAACTG GGCTAAATGC ACCAAGTGCG GCAAACGCAA AAAACTTGAA
GATGAAAGCT AA
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| Protein sequence | MKEKLVIVES PAKARTISKM LGKDFNIMAT MGHIRDLPKS TLGVDVENSF TPKYVSLKAK
AKVIKELKDA VKNSKAIYLA TDPDREGEAI AWHISEVTKA NLAKPKRVVF HEITKEAIDK
AFKNTRELDM DLVNAQQARR VLDRLVGYKL SPLLWRKVQR GLSAGRVQSV SLKIIVDRER
EIEKFVSAEY WNIEALLNKK VKSAAFKASL AGYVTKGKLE IHNESEAEQI KKELEVSDYQ
VLKIKKKSNL RQSPAPFITS TLQQEAWRKL HFSAKQTMVI AQQLYEGLNI EGEGEVGLIT
YMRTDSTNVA RTAVAETRDY ISEKYGPAYL PKQARVFSSK VKGAQEAHEA IRPTRIIRTP
DLIKKSLSTE QFKLYQLIWQ RMMASQMSPA VFDNTTIDIE AKHQPSKTRY LLRTTSSVNT
FPGFTIVYIE GKDEDEEAAQ SSLPPMEEGE ELKLKSLEAS QHFTQPPPRY TEATLIKALE
QYGIGRPSTY APTISTIQER EYITKLKGSL KPSELGMLVN DLLVEYFPDI IGIDFTAAME
TELDKIATEK LDWVPIIRRF YEPFIKEIEA ASEKIEKIKP PEEELDELCP ECNAKLVVKR
GRFGKFIACS RYTKEEGGCR YTRSYQIKTG AKCPECNSDI VEKYSKKGKI FYGCAGYPNC
KFVSFYKPLS KPCPECGALM IKSGKNWAKC TKCGKRKKLE DES
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