Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DET0657 |
Symbol | cobT-1 |
ID | 3230057 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides ethenogenes 195 |
Kingdom | Bacteria |
Replicon accession | NC_002936 |
Strand | + |
Start bp | 605751 |
End bp | 606809 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637120222 |
Product | nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase |
Protein accession | YP_181399 |
Protein GI | 57234589 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00493685 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACTAT TAAATGCAAC ACTGGCAAAG ATACACGGGC TTGATAAAGA GGCCATGACC AAGGCTCAGG CCCATCAGGA TATCCTGACT AAACCACAGG GTTCTTTAGG CAAGCTGGAA GCCATTGCGG TTCAGCTTGC AGGCATTCAG GGGAATGCTA AGCCCCAAAC TGCCCGCAAA GCCATTATCA CCATGGCTGG CGACCACGGT ATTATTGATG AAAAGTTTCA CAACTGGCCC AAAGAAGTAA CCGCCCAGAT GCTGCAAAAT TTCGCCCATG GCGGTGCCGC CATAAATGTC CTTTCCAGAC AGGTGGGGGC GCGTAATGTG GTGGTTGCTT TGGGGGTGGC CACCCCCATG GCGGAAGACC CGAATATAAT CAACCGCAAT ATTGCCCCCG GTACCAATAA CATGGTTTAC GGTCCGGCTA TGACCCGCGA GCAGGCGGTA AAAGCTATTG AAACAGGTAT AGAGATTGTA AACGCCGAGG TTAAAAAGGG GCTGGATTTG GTAGGTACCG GTGATATGGG TATCGGCAAT ACTTCCCCTT CCGCCGCTAT CTGCTCTGTC ATTACCGGGC GGTCACTTGA AGAGGTAACC GGGCGGGGTA CCGGTGCGTC AGACGAGCAG ATGAAGCTGA AACGCAATGC CATTGCCAAG GCAATTGCCC TTAACAAACC CAATGCCCAA GATGCGCTGG ATGTGCTGTC CAAGGTGGGC GGCTATGAAA TAGGCGGTCT GGCAGGAGTA ATACTGGGTG CGGCAGCCAA CAGAGTGGGG GTGGTTGTAG ACGGCTTTAT TTCAGGTGCG GCGGCACTTA TTGCGTATAC TATCTGCCCG CAGGCAAAGG ACTTTATGTT TGCCGCTCAC CAGTCGGTAG AGCCGGGACA CCGTATTTTG CTTGAACACA TGGGGCTGGA TGCTATTTTG AAAATGGATA TGCGGCTGGG TGAAGGCACT GGTGCCGCCC TTGCCATGAA TATTATCGAA GCATCCAACC GTATCCAGCA CGAGATGGCC TCTTTTGCAG ATGCCGGGGT TTCCGAAAAG CAAAGTTAG
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Protein sequence | MELLNATLAK IHGLDKEAMT KAQAHQDILT KPQGSLGKLE AIAVQLAGIQ GNAKPQTARK AIITMAGDHG IIDEKFHNWP KEVTAQMLQN FAHGGAAINV LSRQVGARNV VVALGVATPM AEDPNIINRN IAPGTNNMVY GPAMTREQAV KAIETGIEIV NAEVKKGLDL VGTGDMGIGN TSPSAAICSV ITGRSLEEVT GRGTGASDEQ MKLKRNAIAK AIALNKPNAQ DALDVLSKVG GYEIGGLAGV ILGAAANRVG VVVDGFISGA AALIAYTICP QAKDFMFAAH QSVEPGHRIL LEHMGLDAIL KMDMRLGEGT GAALAMNIIE ASNRIQHEMA SFADAGVSEK QS
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