Gene DET0604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDET0604 
SymbolrpoC 
ID3230059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides ethenogenes 195 
KingdomBacteria 
Replicon accessionNC_002936 
Strand
Start bp558413 
End bp562300 
Gene Length3888 bp 
Protein Length1295 aa 
Translation table11 
GC content52% 
IMG OID637120169 
ProductDNA-directed RNA polymerase, beta' subunit 
Protein accessionYP_181346 
Protein GI57234591 
COG category[K] Transcription 
COG ID[COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit 
TIGRFAM ID[TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGAAG TTAATGATTT TGATGCAATA CGGATTTCAC TGGCTTCCCC TGACCAGATA 
AGAAGCTGGT CTTATGGTGA GGTTACCAAA CCTGAAACCA TAAACTATCG TACGTTAAAG
CCGGAGCGGG ACGGTCTGTT CTGTGAGCGT ATCTTCGGCC CTATAAAGGA CTTTGAGTGT
GCCTGCGGCA AATACAAACG TATCCGCTAC AAGGGCATTA TATGTGACAA GTGCGGCGTG
GAAATTGCTC GTGCCAAGGT ACGGCGTGAA CGGATGGGGC ATATTGAACT GGCCTGTCCG
GTAGGCCATA TCTGGTTTAC CCGCGGTATT CCCAGCCGGG TAGGCCTGCT GCTTAATTTG
TCCACCCGCA GCCTTGAAAG GATAATTTAT TATTCCCATT TCATTATAAC CGGGGTAAAT
GACGAAGCCC GTGAAAAGGC CATTAAAGAT TTGGAGGTTA TTTCCTCCCA GCGGGTAGCT
GATAAGGGCA GCGAGGTAGA TACCAGGGTT GCCCAGATGG AAGCCGAAGA TGCCACTGTT
GAAGCCATAA ATCAGGTTCG CCGTGATTTT TCAACTGAAC GTGAGCAGAT GGAAGAAGAT
ATCCAGCTGC TTATAGACCA GCTGAAAGAC CTCCAAATAG GCAATTTGCT GACCGAAAAC
CAGTATTACG AGCTGAAACA GCGTTTCAGC AATGTTTTTG AGGCCTCCAT GGGTGCCGAA
GCTCTGCTTA AGCTGCTTTC TTATATAGAT ATGGATAAGG AGCGGAGCAA ACTTATTCAG
GAAACCCGCT CCACTTCCGG CCAGCGCCGC AAAAAGGCTG GCAAACAGCT TCAGCTGGTA
GAGGCTTTCC GCCGCTCCAG CAACAAGCCT GAGTGGATGA TTATGACGGT TCTGCCGGTA
CTGCCGCCTG ACCTGCGTCC TATGGTTCAG CTTGACGGCG GCCGTTTTGC CACCAGTGAC
TTAAATGACC TTTACCGCCG GGTTATCAAC CGGAACAACC GTCTCCAGCA CCTGATGGAA
ATCGGGGCGC CGGAGATTAT TATCCGCAAC GAAAAGCGTA TGCTTCAGGA AGCGGTGGAT
TCACTTATTG ATAACGGACG CCGCGGCAAG AGCGTGGCTG TAAATGGTGA CCACAAAGCC
AAGTCCCTTT CTGACCTGCT TCGCGGCAAA CAGGGACGCT TCCGCCAGAA CCTGCTGGGT
AAACGGGTTG ACTATTCAGG CCGTTCGGTT ATTGTGGTAG GCCCTTCACT CAAACTTTCA
CAGTGCGGTC TGCCCCGCCG TATGGCACTT GAACTCTTTA AGCCCTTTGT CATGCACCGC
TTGGTACGGG ACGGCTTAGC CCCCAATATC AAGAGCGCCC GCCGTCTGGT AGAGCGCGCC
CGCCCGGAGG TTTACGATAT TCTGGAAGAG GTGGTCAAGG AGAGGCCGGT TATGCTTAAC
CGCGCTCCCA CTCTGCACCG CCTTAGTATC CAGGCCTTTG AGCCGGTGCT TATTGACGGC
AGTGCCCTCA GGCTTCACCC GCTGGTCTGT TCAGCCTTTA ACGCTGACTT TGACGGTGAC
CAGATGGCTG TCCACGTGCC CCTTTCCAAA GCGGCCGTGA AGGAAGCCCG TGAAACCATG
CTGTCCATTC ATAATATGAT GCTTCCCTCC AGCGGTGAGC CGGTGGTATC CCCCAGCCTT
GATATGGTCT TCGGGTGTTA TTACCTGACT ACTACCCGGC CGGGTGCTAA GGGTGAAGGC
AAGATATTCA GTGACTTTGA AGAAGCCAAG CACTATTACG AAATGGGTAT TATTGACCTC
AGGGCTATTA TCAAAGTCCG TGACGGCAAG GGTAATATGC TGGAAACCAC TACCGGGCGG
ATTATATTTA ATGATGTCCT GCCCAAGGAA GTAGAGTTCC AGAATATGGA TATACCCAAA
TCCGCCATCA AAAAGATAAT CGGCCGCTGT TACAAGATTC TTTCCAGCCA GGATATGGCC
GTCATGCTGG ACAAGATAAA ACAGCTTGGC TTCAAATACG CCACCAGCTC AGGCATTTCC
ATTGCCATGA GTGATATTTC GGTGCCGCGT GAAAAGGCCA AGCTGGTAGC TGCCGCTGAT
GAGCGGACTG CCATTTCCGA AGGTCAGTTT GCCCGCGGTC TTATCACCGA AGACGAACGC
TACAACAGCA TCATTGAAAC CTGGATGGAA ACTACTGACC GCATTACAGA TGCTATTCAG
GCCGGTTTTG ACAAACAGGG TTCCGTGTAC ATGATGGCTA ACTCCGGCGC TAAGGGTAAT
ATTTCCCAGA TACGCCAGAT GGCCGGTTTA CGCGGCCTTA TGACTAACCC GTCCGGCCGT
ATTATTGACT TCCCCATCAA GTCTTCCCTG CGTGAAGGCC TGACTACTCT GGAATACTTT
ATATCTACTC ACGGTGCCCG CAAGGGTCTG GCTGACACCG CTTTACGTAC GTCCGGTTCA
GGTTACCTGA CCCGCCGCCT TATAGACGTA ACCCAGGATG TTATTATCCT TCAGGAAGAC
TGCGGCACTT CAAACGGCAC CTGGATAGTA GAACCCAAAG AAAAGGGTAT GCTGCCCCCG
CTGGTTGACC GTGTACTCGG CCGCTGGGCA GCTCACAATG TGGTTCACCC CCAGACCGGC
GAAATTATCG TGGGTAACAA TGAAGAGATT GACGAAGCTA AGGCTAAGGC TATCGGCGAA
GCCGGTATCA CCGAAGTCTT TGTCCGCTCT CCGCTTACCT GCGAAGCTAC TCACGGCATG
TGCCGCCGCT GTTACGGGCG TGACCTTGGC CGTGTCCGTC TGGTAGACAT GAATACCGCC
GTAGGTATCA TTGCCGCCCA GAGTATCGGT GAGCCCGGTA CCCAGCTGAC ACTCCGTACC
TTCCATACCG GCGGTGTGGT AGGCGTAGAT ATTACGACCG GTCTTCCCAG AGTTGAAGAA
CTCTTTGAGG CCCGTCCGCC CAAGGTTCAG TCCATTATTT CTGAAATAGA CGGTGAGGCC
GAGGTTATTG AAAATGAAAA CGGCCGCCAT ATCCGCATAT TCTCTGATGA AGTATATCAG
GACGAATATG AGCTGCCTTC CGGCTGGAAG ACTCAGGTTC AAAGCGGACA GTGGGTGGAT
TCCGGCATGG TGCTGGCTTC GCCTGAAATG GAAGGCAAGT CCAAGGCGGT AGTTCAGAGT
GACCAGAATG TGGTTGCCAG AGTGGCCGGT GAAGTTTCAG TGGATGGCAG CCTTATCACC
ATCAAATACA GCGAAAGCGA AGAACGTGAA TACGCTATAC CTGCCGCCAT GCAGATAAAG
GTTAAAACCG GGGATAGTGT CCGTGCCGGT CAGCAGCTGA CTGACGGCTC TATAAACCCG
CAGGATATTC TGTCCATTTT GGGCAGGGAC GCTGTCCAGA AGTATCTGGT TGAAGAAGTC
CAGAAGGTTT ACTACTCTCA GGGCGTACAT ATCAACGATA AACACATAGA GGTTATTGCC
CGCCAGATGC TTATCAAGGT ACGCATTGAC TCCTCAGGTG ATACTGACCT GGTTCCGGGT
GAACTGGTAG ACAAGTTCCG CTACGAGGAT ATCAACGCTA AGGTTCTGGC CGAAGGCGGC
GAACCGGCAA CCGCCCATAC CGTGCTTATG GGTATTACCC GTGCTTCACT CAGCACCGAA
AGCTGGCTGG CGGCGGCCTC CTTCCAGGAG ACCACCCGTG TCCTTACTGA TGCCGCCATT
TACGGCAAGG TGGATAAGCT GTCCGGCCTT AAGGAAAATG TTATCATAGG CAAGCTTATA
CCTGCCCAGT GCAAATCCTG CAAGGAAGCT ACGGTTGAAA GAGCGGAACG GATAGCCGCT
GCCGCTGCCG CACCTGCGGT CAGCACTCTG CCGGAAAATT GCCTTTAG
 
Protein sequence
MNEVNDFDAI RISLASPDQI RSWSYGEVTK PETINYRTLK PERDGLFCER IFGPIKDFEC 
ACGKYKRIRY KGIICDKCGV EIARAKVRRE RMGHIELACP VGHIWFTRGI PSRVGLLLNL
STRSLERIIY YSHFIITGVN DEAREKAIKD LEVISSQRVA DKGSEVDTRV AQMEAEDATV
EAINQVRRDF STEREQMEED IQLLIDQLKD LQIGNLLTEN QYYELKQRFS NVFEASMGAE
ALLKLLSYID MDKERSKLIQ ETRSTSGQRR KKAGKQLQLV EAFRRSSNKP EWMIMTVLPV
LPPDLRPMVQ LDGGRFATSD LNDLYRRVIN RNNRLQHLME IGAPEIIIRN EKRMLQEAVD
SLIDNGRRGK SVAVNGDHKA KSLSDLLRGK QGRFRQNLLG KRVDYSGRSV IVVGPSLKLS
QCGLPRRMAL ELFKPFVMHR LVRDGLAPNI KSARRLVERA RPEVYDILEE VVKERPVMLN
RAPTLHRLSI QAFEPVLIDG SALRLHPLVC SAFNADFDGD QMAVHVPLSK AAVKEARETM
LSIHNMMLPS SGEPVVSPSL DMVFGCYYLT TTRPGAKGEG KIFSDFEEAK HYYEMGIIDL
RAIIKVRDGK GNMLETTTGR IIFNDVLPKE VEFQNMDIPK SAIKKIIGRC YKILSSQDMA
VMLDKIKQLG FKYATSSGIS IAMSDISVPR EKAKLVAAAD ERTAISEGQF ARGLITEDER
YNSIIETWME TTDRITDAIQ AGFDKQGSVY MMANSGAKGN ISQIRQMAGL RGLMTNPSGR
IIDFPIKSSL REGLTTLEYF ISTHGARKGL ADTALRTSGS GYLTRRLIDV TQDVIILQED
CGTSNGTWIV EPKEKGMLPP LVDRVLGRWA AHNVVHPQTG EIIVGNNEEI DEAKAKAIGE
AGITEVFVRS PLTCEATHGM CRRCYGRDLG RVRLVDMNTA VGIIAAQSIG EPGTQLTLRT
FHTGGVVGVD ITTGLPRVEE LFEARPPKVQ SIISEIDGEA EVIENENGRH IRIFSDEVYQ
DEYELPSGWK TQVQSGQWVD SGMVLASPEM EGKSKAVVQS DQNVVARVAG EVSVDGSLIT
IKYSESEERE YAIPAAMQIK VKTGDSVRAG QQLTDGSINP QDILSILGRD AVQKYLVEEV
QKVYYSQGVH INDKHIEVIA RQMLIKVRID SSGDTDLVPG ELVDKFRYED INAKVLAEGG
EPATAHTVLM GITRASLSTE SWLAAASFQE TTRVLTDAAI YGKVDKLSGL KENVIIGKLI
PAQCKSCKEA TVERAERIAA AAAAPAVSTL PENCL