Gene DET0566 details

Gene Information

• Locus tag: DET0566
• Symbol: rimM
• ID: 3230134
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: -
• Start bp: 520575
• End bp: 521078
• Gene Length: 504 bp
• Protein Length: 167 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637120131
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_181309
• Protein GI: 57234665
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.00173533
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCCAAG AAGAAGAATA TATTTTAATA GGCAAGGTGC TGGGAGTATG GGGTATAAAC 
GGCGGTCTCA AAATTGAGGT GCTGACTGAT TTCCCCGAAC GCTTTGATGC CGGGAATGAA 
CTCCTGATAG GACGCGCGCC ATATACCATA AGCCAGACCA GCTGGCAAAA AGCCCAGGTG 
ATTGTTCACC TGAGCGAAAT AACCGGTATT GATGCCGCTG AGGAGCTTAG CGGTGCTCAG 
GTAGAAATAC CTGCCGCTGC TTTGAAAAAA CTGCCGAAGG GCGTTTACTA TGACTTTCAG 
CTGATAGGTT TGGAAGTGAC AGACCTGTCC GGTAATAGAA TAGGGCAAAT AAAGGAAATA 
CTCCATATGC CCTCAAACGA TATATACGTA AGCAGTTACG GTGCTAAAGA GGCCTTGATA 
CCGGCAGTCA AAGATGTGGT CAAGGAAATA AACCTGCAAA AAGGCCAGGT GATAATAGAC 
CCTATTCCCG GACTGCTTGA CTAG 

 

Protein sequence

MTQEEEYILI GKVLGVWGIN GGLKIEVLTD FPERFDAGNE LLIGRAPYTI SQTSWQKAQV 
IVHLSEITGI DAAEELSGAQ VEIPAAALKK LPKGVYYDFQ LIGLEVTDLS GNRIGQIKEI 
LHMPSNDIYV SSYGAKEALI PAVKDVVKEI NLQKGQVIID PIPGLLD