| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0551 |
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| Symbol | rpoD |
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| ID | 3230115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides ethenogenes 195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002936 |
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| Strand | - |
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| Start bp | 506110 |
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| End bp | 507672 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637120117 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_181295 |
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| Protein GI | 57234646 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0248061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCTG AGAAAGATAA GAAAGAGTTC AGCCCTGACG ATACTTATGA TGACAAAGAT
ATAGAGGATG GGCTGGAAGA TATCCATGAG GAACAGGATG CCGAAGCTGA AAATGACAAA
ATGGCGGAGC CTGACCTCAA AGATATAGCC GATACCGACA TCCCGGCCGA ACTAACCGAA
GAAGAGCTGG CAGCCGAAGC GGATATGATG CCGGACACGG ACGAAGAAAT CGGCCCGCTT
AATATTGACC TTGAAATACC GCTTGAGCAG ATAGATACCC AGGGTATAGT AGATGACCCG
GTGCGCATGT ATCTGCATGA AATCGGGCGG GTACCCCTGC TTTCCGCTGA AGACGAAAAA
ACCCTGGCCA AGAAAATGGA AGAAGGCAAA CGCATACGCG AAATCCGCCA GGAGTGCCTG
GAAAAACGCG GGCGTTACCC TTCGGCTGCG GAGTCTTTCC TGTGTATGCT CAGGGAACTT
TCCCAAGCAA CCGAAGTCCT GTTCCAGTTA GGACAGGAAC TGGGTATGGA TACTTCTGCC
AGCTTGAAAA ATGTTATCCA TGACCCCAAA CTAAGAACAG CTATTGACCA TGAGATTGAC
CAGCAGCTCA CTAAAAATAT TTCGGATAAT ACCGGCAAGA GCATGGCGGA AATTGAGCAG
TCATTTATCA ATCTGGCTAT CAACAGCTCT CTCCTGCCTA AGGTTATACT GGATGCCATA
CCTGAAAAAA TGACTATCCC TGAAATAGCC ACCTATACCA ATGACCCCGC CTTTATAAGC
CATCTGGAGC GGCATGAAGC CAGCCTTAAG TATTATCTGG ACAACCTTGA GATAGACGCC
AAACGGGCGG AACGCCACCT TATTCAGGCT AACCTCCGTC TGGTAGTCAG CGTGGCTAAA
AAACACATCG GCAGAGGCAT GCCCCTGCTT GACCTTATAC AGGAAGGCAA TATCGGCCTT
ATACGGGCAG TGGAAAAGTT TGACTTCCAC CGCGGTTTCA AGTTTTCCAC TTACGCCACC
TGGTGGATAC GCCAGGCCAT TACCCGGGCT ATTGCAGACC AGGCCAGAAC TATCCGCATA
CCTGTCCATA TGGTTGAAAC TATCAACAAA CTGCTTTCCA TAAGCCGCCA GTTATCCCAG
AAACTGGGGC GTGAGCCTAC TCCTGATGAA ATAGCGGTTG AGATGGACCT GCCGCCGGAA
AAGGTGCGTG AGATTGCCAA GGTTTCCCAG CTGCCGGTTT CGCTGGAGTC CCCCATCGGC
GAAGAAGAAG ACAGCCACCT GGGAGACTTT ATTGAAGACC AGAATGCACT GGCTCCGCCG
GATGCCGCTT CACGCCAGCT GCTCAAAGAG CAGATAGATA CAGTGCTTGG CAGCCTGACC
CCGCGTGAAC GCCGGGTACT TCAGCTGCGT TTCGGGCTGG AAGACGGCCG CAGCCGTACG
CTGGAAGAAG TAGGCAAAGA GTTTAACGTT ACCCGTGAAC GTATCCGCCA GATAGAAGCC
AAGGCTCTGC GTAAACTCCG CCACCCCAGC CGCAGCCGCA AACTAAAAGA TTATCTGGAA
TAA
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| Protein sequence | MPAEKDKKEF SPDDTYDDKD IEDGLEDIHE EQDAEAENDK MAEPDLKDIA DTDIPAELTE
EELAAEADMM PDTDEEIGPL NIDLEIPLEQ IDTQGIVDDP VRMYLHEIGR VPLLSAEDEK
TLAKKMEEGK RIREIRQECL EKRGRYPSAA ESFLCMLREL SQATEVLFQL GQELGMDTSA
SLKNVIHDPK LRTAIDHEID QQLTKNISDN TGKSMAEIEQ SFINLAINSS LLPKVILDAI
PEKMTIPEIA TYTNDPAFIS HLERHEASLK YYLDNLEIDA KRAERHLIQA NLRLVVSVAK
KHIGRGMPLL DLIQEGNIGL IRAVEKFDFH RGFKFSTYAT WWIRQAITRA IADQARTIRI
PVHMVETINK LLSISRQLSQ KLGREPTPDE IAVEMDLPPE KVREIAKVSQ LPVSLESPIG
EEEDSHLGDF IEDQNALAPP DAASRQLLKE QIDTVLGSLT PRERRVLQLR FGLEDGRSRT
LEEVGKEFNV TRERIRQIEA KALRKLRHPS RSRKLKDYLE
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