Gene DET0502 details

Gene Information

• Locus tag: DET0502
• Symbol: rpoA
• ID: 3230220
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: +
• Start bp: 459132
• End bp: 460124
• Gene Length: 993 bp
• Protein Length: 330 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637120068
• Product: DNA-directed RNA polymerase subunit alpha
• Protein accession: YP_181246
• Protein GI: 57234751
• COG category: [K] Transcription
• COG ID: [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit
• TIGRFAM ID: [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00227781
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCTGATC TAGCTATACC CACAATTAGT TGCACCGAAA GCGACGGTAA ATACGGGCGC 
TTTGTGGTAG AACCTTTGGA AAAAGGTTTC GGGACTACTA TGGGTAATTC ACTTCGCCGT 
ATACTTCTTA GCTATCTGGA CGGGGTTGCC ATTACCCGCG TCAGGATAGA CGGCATTCAG 
CATGAGTTTA GCGCTCTGCC GAAAGCCAAG GAAGATACAC TGGATTTTTT GCTGAACCTT 
AAAAATATAA GGGTGGAAAG CCTGTCCGGG CTTGAGGGTA TTTTATACCT GAAGGCTTCA 
GGTGCAAAGG TAGTTACAGC AGCTGATATT GAACCCTCAA ATGATTTTGA GGTAGTAAAC 
CCGGAGCTGT ACCTGCTTAC CCTTGATTCA GATGATGCAG TTTTGAATGT GGAACTTGAG 
GTGGAACTTG GCCGGGGCTA TCGGGCTCCT GAGAGCACCG AGAATACGCC TATAGGCACT 
ATTCCGGTAG ATGCCATTTT CACTCCCATC CGCAAGGTGA ACTTTACCAC TGAGCCTATG 
CACGTAGGCC GTGAAACCAG CCTTGAGCGT TTGGTGCTTG AGGTCTGGAC TGATGGAACT 
ATAGAACCGG CTACTGCCGT CAGCCGCTCA GCGGATATTC TGGTTAAACA GTTTGCGGCT 
CTGGTCAGCC ATAACAAGGT AGTGGCTGAA GTAGAGGCCA GCGAACCGGT TAAATATGCT 
ATACCCGAAG AAAAATATAA TATGCCCATT GAGCAGCTGG ATTTGTCCGT CAGGGCTGTC 
AATTGTTTGC GGCATGCCGG TATAACAACG GTGGGTGAAG TTATAAACAG GGGTACCAAA 
GAGCTGCTGA CTCTGCGGAA TTTTGGTCTT AAATCTCTGA CCGAGCTTGA AGACAGGCTT 
AAGACTATCG GTCTGTCGTT GAACCCCGAA GAAGAGTTGT TTGAGGATGC TGAAAACAGC 
AAGAAGAAAA ACAAGGGCAT GGACGAAGCC TAA 

 

Protein sequence

MSDLAIPTIS CTESDGKYGR FVVEPLEKGF GTTMGNSLRR ILLSYLDGVA ITRVRIDGIQ 
HEFSALPKAK EDTLDFLLNL KNIRVESLSG LEGILYLKAS GAKVVTAADI EPSNDFEVVN 
PELYLLTLDS DDAVLNVELE VELGRGYRAP ESTENTPIGT IPVDAIFTPI RKVNFTTEPM 
HVGRETSLER LVLEVWTDGT IEPATAVSRS ADILVKQFAA LVSHNKVVAE VEASEPVKYA 
IPEEKYNMPI EQLDLSVRAV NCLRHAGITT VGEVINRGTK ELLTLRNFGL KSLTELEDRL 
KTIGLSLNPE EELFEDAENS KKKNKGMDEA