Gene DET0474 details

Gene Information

• Locus tag: DET0474
• Symbol: rplC
• ID: 3230155
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides ethenogenes 195
• Kingdom: Bacteria
• Replicon accession: NC_002936
• Strand: +
• Start bp: 445780
• End bp: 446397
• Gene Length: 618 bp
• Protein Length: 205 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 637120040
• Product: 50S ribosomal protein L3
• Protein accession: YP_181218
• Protein GI: 57234686
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.00148542
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTCAAG GTATTATCGG TAAAAAAATC GGTATGACCC AGATATTCCA GGAGGACGGC 
AAGGCTCAGC CGGTCACTCT GGTAGAAGCT GGTCCGTGTG TAGTGGTCCA GGTCAAGACC 
GAAAAGCAGG ACGGCTATGA GGCTGTTCAG TTGGGTTACG GCAAGGCCAA GCATATCACT 
TCGGCTGTCA AAGGTCAGTG CAGAGGATTC GGTGAATTCA AAGTGCTGCG CGAAGTAGAC 
GTGGATGATA TTGCGGCGGT TAATGTCGGT GACCAGATTA CGGTCAGTGA CTTTAAGGAC 
GGCGAAAAGA TAGACGCCAG CGGCGTCTCC AGAGGGCGTG GTTTTGCCGG TGTAGTTAAA 
CGCTGGCATT TTGCCGGTGG TCCCAAGACC CACGGTCAGT CTGACCGTCA CCGGGCTCCG 
GGTTCCATCA GCTCCACCAC CACTCCCGGC CGTATTTATA AGGGCAAGCG CATGGCAGGC 
CACATGGGGA ATGATGCGGT GACTATCCGC AATCTGGTTG TGCTCAAAAC TGATGCAGAG 
AAAAATCTGC TGATGGTAAA GGGTGCTATC CCCGGCGGCA AGAATACAAT AATATTAATT 
AAGAAAACGG GTAAATAA 

 

Protein sequence

MIQGIIGKKI GMTQIFQEDG KAQPVTLVEA GPCVVVQVKT EKQDGYEAVQ LGYGKAKHIT 
SAVKGQCRGF GEFKVLREVD VDDIAAVNVG DQITVSDFKD GEKIDASGVS RGRGFAGVVK 
RWHFAGGPKT HGQSDRHRAP GSISSTTTPG RIYKGKRMAG HMGNDAVTIR NLVVLKTDAE 
KNLLMVKGAI PGGKNTIILI KKTGK