Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DET0392 |
Symbol | |
ID | 3230272 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides ethenogenes 195 |
Kingdom | Bacteria |
Replicon accession | NC_002936 |
Strand | - |
Start bp | 372979 |
End bp | 373809 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637119958 |
Product | AP endonuclease |
Protein accession | YP_181137 |
Protein GI | 57234803 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0648] Endonuclease IV |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000214103 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGGTT TACTTTTCGG CACCGCCGGC ATTCCCTATT CCACCCCCAA ACACACCACC CAGAACGGTA TCCACCGGGT GGCAGAGCTG GGGCTGGATG GCATGGAAAT AGAGTTTGTC CGCGGGGTAT ATATGAAAGC CCCGGATACC AATCCGGTAC GCATACTTTC AGAGCTTCTC CGCATAAAGC TGTCCGCCCA TGCCCCGTAC TACCTGAACT TTAATGCAGT GGAAGAAAAC AAGGTTAAAA TGAGCCAGCA CCTGCTCTAC CAGTCCGCCA AAACGGCATC TCTGTGCGGG GCGGGGTCAC TGGTATTTCA CCCAGGTTTT TACCTGACGG ATTCGCCTTC TGCCGCCTAC GAAGCCATAC GGGATAATAT CCGCCCGGTG GCTGAACGTC TTCAGAAAGA GGGCTTTCCG ATAAGCCTCC GCCCCGAAGT AAGCGGCAAA GTCACCCAGT TCGGAGACCT TAAGGAGACT ATGGCACTTT GCAGCGAGAT ACCCGGCCTG CTGCCGACTA TAGATTTTTC CCATTACCAT GCCCGCACCG GCAAATTCAA CTCTTATTCC GAGTTTAGTT TTATGTTAAC CACTATGGCT GATTACCTGG GTGAAAGCGC CCTTAAAAAT ATGCATATAC ACATTTCCGG TATAGATTAC TCACCCCGCG GCGAAAGACA GCACCTGAAC CTGGCTGAGT CAGATTTCAA TTATAAAGAA CTGCTGCTTT GCCTTCGTGA CAAAGGCTGT GCCGGGCTGG TAATCTGCGA AAGCCCTAAT CTGGAGGAAG ATGCCCTGCT TCTTAAAGAG ACCTACTTCT CTCTGGCCTG A
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Protein sequence | MAGLLFGTAG IPYSTPKHTT QNGIHRVAEL GLDGMEIEFV RGVYMKAPDT NPVRILSELL RIKLSAHAPY YLNFNAVEEN KVKMSQHLLY QSAKTASLCG AGSLVFHPGF YLTDSPSAAY EAIRDNIRPV AERLQKEGFP ISLRPEVSGK VTQFGDLKET MALCSEIPGL LPTIDFSHYH ARTGKFNSYS EFSFMLTTMA DYLGESALKN MHIHISGIDY SPRGERQHLN LAESDFNYKE LLLCLRDKGC AGLVICESPN LEEDALLLKE TYFSLA
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