Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DET0333 |
Symbol | secD |
ID | 3230395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides ethenogenes 195 |
Kingdom | Bacteria |
Replicon accession | NC_002936 |
Strand | - |
Start bp | 317053 |
End bp | 318402 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637119900 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_181080 |
Protein GI | 57234926 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000488895 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGAAGGA AAAACGGGCT CGTGTTTTTG GCCATACTGG CCGCCATGAT CCTTGCCTTT ACCATAGTGC TGCCAACAGA CAAAGGCGCA CTTCTGGGCA AGGGAATCCT GTTTGGTCTG GACTTAAAGG GAGGCCTGCA CATGGTATAT CAGGCTGACT TGTCCAATGT AGATGAAAGC AATATTGACA GCGTAATGGA TGGCGTGGTG GAGGTTATCT CCAACCGCAT CAACCCTCTT GGTGTCACCG AAGCCTCAAT CCAGCGTCAG GGAGATGACC GGATAGTGGT TGAACTGCCG GGGCTGGATA TTACAGATGA ACAAAAAGCC CGCATCGGCC GTACCGCCCT GCTGGAATTC GGCGAACTGG CGGCTGAAGG CGAAGATTAT AAATGGGAAA ACAGTCTGGG CAAATGGAAA CCGGCCACCG CCACTATTGA CGGGGTTGAG TATGCCCTGA CCAGTGCCTA TTTCAAAGAC AGTACTTATG TAAACCGGGA CCAGTACGGC AATATTTTAC TGGTATTTGA ATGGGATGAC ATCGGGGCCC AGTTATCCAA AGAAATCACC ACCCGCCTTT TAAGCCAGCA GCTGGGTATC TTTGAAGGTG ATGAAGCCCT GGCCGGTGAT GATGGCGTAC CAATTGCCCC CTACATAAAC AATGTTATTG AAACCAGCGG CGTGATAGAA GGCTTAAGCT ACAACGAAGC AGAAATGCTT TCCAACCAGC TGAATGCCGG CCGCCTGCCG GTGCCGCTTG AGCCCATATA CGAGCAGACC GTTTCACCTA CCTTGGGTCA AAACTTTGTT GACCTGGCCG TAAAAGCCGG TCTGGCAGGC ATAATCCTGG TTATGATATT CATGATAGCC TTTTACCGCC TGCCCGGTCT GCTGGCCAGT ATAGCTCTGG TATTTTACGG AGTAATTGTA CTGGCTCTCT TTAAACTGGT ACCGGTTACC CTTACTTTGG CGGGTATCGG CGGTTTCATT GTATCAGCAG GTATGGCAGT AGATGCCAAT ATCCTGATAT TTGCCCGTTT GAAAGAGGAA CTGCTGGCTG GCAAGACACT GGGAGCGGCG GTGGAAGCCG GCTTTTCCCG TGCCTGGTCT GCCATCTGGG ACTCCAACGT TACCACCTTT ATAGCCTGCG GAATCCTGTT CTGGGTGGGC GGTACTATTG CGGCCGGGGC ACCGGTCAAA GGTTTTGCCG TAACCCTGTT CCTGGGTGTG GCGGTCAGTA TGTTCACCGC TATCTTTGTC ACCCGCACCT TGCTCAGGCT TTTTGTAGGT ACTAAAACCG CTAAAAAGCT TGCCCTATTC ACCACCCAGA CAAGAGGCAA AAATGAATAA
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Protein sequence | MRRKNGLVFL AILAAMILAF TIVLPTDKGA LLGKGILFGL DLKGGLHMVY QADLSNVDES NIDSVMDGVV EVISNRINPL GVTEASIQRQ GDDRIVVELP GLDITDEQKA RIGRTALLEF GELAAEGEDY KWENSLGKWK PATATIDGVE YALTSAYFKD STYVNRDQYG NILLVFEWDD IGAQLSKEIT TRLLSQQLGI FEGDEALAGD DGVPIAPYIN NVIETSGVIE GLSYNEAEML SNQLNAGRLP VPLEPIYEQT VSPTLGQNFV DLAVKAGLAG IILVMIFMIA FYRLPGLLAS IALVFYGVIV LALFKLVPVT LTLAGIGGFI VSAGMAVDAN ILIFARLKEE LLAGKTLGAA VEAGFSRAWS AIWDSNVTTF IACGILFWVG GTIAAGAPVK GFAVTLFLGV AVSMFTAIFV TRTLLRLFVG TKTAKKLALF TTQTRGKNE
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