Gene DET0333 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDET0333 
SymbolsecD 
ID3230395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides ethenogenes 195 
KingdomBacteria 
Replicon accessionNC_002936 
Strand
Start bp317053 
End bp318402 
Gene Length1350 bp 
Protein Length449 aa 
Translation table11 
GC content51% 
IMG OID637119900 
Productpreprotein translocase subunit SecD 
Protein accessionYP_181080 
Protein GI57234926 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000488895 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAAGGA AAAACGGGCT CGTGTTTTTG GCCATACTGG CCGCCATGAT CCTTGCCTTT 
ACCATAGTGC TGCCAACAGA CAAAGGCGCA CTTCTGGGCA AGGGAATCCT GTTTGGTCTG
GACTTAAAGG GAGGCCTGCA CATGGTATAT CAGGCTGACT TGTCCAATGT AGATGAAAGC
AATATTGACA GCGTAATGGA TGGCGTGGTG GAGGTTATCT CCAACCGCAT CAACCCTCTT
GGTGTCACCG AAGCCTCAAT CCAGCGTCAG GGAGATGACC GGATAGTGGT TGAACTGCCG
GGGCTGGATA TTACAGATGA ACAAAAAGCC CGCATCGGCC GTACCGCCCT GCTGGAATTC
GGCGAACTGG CGGCTGAAGG CGAAGATTAT AAATGGGAAA ACAGTCTGGG CAAATGGAAA
CCGGCCACCG CCACTATTGA CGGGGTTGAG TATGCCCTGA CCAGTGCCTA TTTCAAAGAC
AGTACTTATG TAAACCGGGA CCAGTACGGC AATATTTTAC TGGTATTTGA ATGGGATGAC
ATCGGGGCCC AGTTATCCAA AGAAATCACC ACCCGCCTTT TAAGCCAGCA GCTGGGTATC
TTTGAAGGTG ATGAAGCCCT GGCCGGTGAT GATGGCGTAC CAATTGCCCC CTACATAAAC
AATGTTATTG AAACCAGCGG CGTGATAGAA GGCTTAAGCT ACAACGAAGC AGAAATGCTT
TCCAACCAGC TGAATGCCGG CCGCCTGCCG GTGCCGCTTG AGCCCATATA CGAGCAGACC
GTTTCACCTA CCTTGGGTCA AAACTTTGTT GACCTGGCCG TAAAAGCCGG TCTGGCAGGC
ATAATCCTGG TTATGATATT CATGATAGCC TTTTACCGCC TGCCCGGTCT GCTGGCCAGT
ATAGCTCTGG TATTTTACGG AGTAATTGTA CTGGCTCTCT TTAAACTGGT ACCGGTTACC
CTTACTTTGG CGGGTATCGG CGGTTTCATT GTATCAGCAG GTATGGCAGT AGATGCCAAT
ATCCTGATAT TTGCCCGTTT GAAAGAGGAA CTGCTGGCTG GCAAGACACT GGGAGCGGCG
GTGGAAGCCG GCTTTTCCCG TGCCTGGTCT GCCATCTGGG ACTCCAACGT TACCACCTTT
ATAGCCTGCG GAATCCTGTT CTGGGTGGGC GGTACTATTG CGGCCGGGGC ACCGGTCAAA
GGTTTTGCCG TAACCCTGTT CCTGGGTGTG GCGGTCAGTA TGTTCACCGC TATCTTTGTC
ACCCGCACCT TGCTCAGGCT TTTTGTAGGT ACTAAAACCG CTAAAAAGCT TGCCCTATTC
ACCACCCAGA CAAGAGGCAA AAATGAATAA
 
Protein sequence
MRRKNGLVFL AILAAMILAF TIVLPTDKGA LLGKGILFGL DLKGGLHMVY QADLSNVDES 
NIDSVMDGVV EVISNRINPL GVTEASIQRQ GDDRIVVELP GLDITDEQKA RIGRTALLEF
GELAAEGEDY KWENSLGKWK PATATIDGVE YALTSAYFKD STYVNRDQYG NILLVFEWDD
IGAQLSKEIT TRLLSQQLGI FEGDEALAGD DGVPIAPYIN NVIETSGVIE GLSYNEAEML
SNQLNAGRLP VPLEPIYEQT VSPTLGQNFV DLAVKAGLAG IILVMIFMIA FYRLPGLLAS
IALVFYGVIV LALFKLVPVT LTLAGIGGFI VSAGMAVDAN ILIFARLKEE LLAGKTLGAA
VEAGFSRAWS AIWDSNVTTF IACGILFWVG GTIAAGAPVK GFAVTLFLGV AVSMFTAIFV
TRTLLRLFVG TKTAKKLALF TTQTRGKNE