| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0333 |
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| Symbol | secD |
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| ID | 3230395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides ethenogenes 195 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002936 |
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| Strand | - |
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| Start bp | 317053 |
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| End bp | 318402 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637119900 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_181080 |
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| Protein GI | 57234926 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000488895 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAGGA AAAACGGGCT CGTGTTTTTG GCCATACTGG CCGCCATGAT CCTTGCCTTT
ACCATAGTGC TGCCAACAGA CAAAGGCGCA CTTCTGGGCA AGGGAATCCT GTTTGGTCTG
GACTTAAAGG GAGGCCTGCA CATGGTATAT CAGGCTGACT TGTCCAATGT AGATGAAAGC
AATATTGACA GCGTAATGGA TGGCGTGGTG GAGGTTATCT CCAACCGCAT CAACCCTCTT
GGTGTCACCG AAGCCTCAAT CCAGCGTCAG GGAGATGACC GGATAGTGGT TGAACTGCCG
GGGCTGGATA TTACAGATGA ACAAAAAGCC CGCATCGGCC GTACCGCCCT GCTGGAATTC
GGCGAACTGG CGGCTGAAGG CGAAGATTAT AAATGGGAAA ACAGTCTGGG CAAATGGAAA
CCGGCCACCG CCACTATTGA CGGGGTTGAG TATGCCCTGA CCAGTGCCTA TTTCAAAGAC
AGTACTTATG TAAACCGGGA CCAGTACGGC AATATTTTAC TGGTATTTGA ATGGGATGAC
ATCGGGGCCC AGTTATCCAA AGAAATCACC ACCCGCCTTT TAAGCCAGCA GCTGGGTATC
TTTGAAGGTG ATGAAGCCCT GGCCGGTGAT GATGGCGTAC CAATTGCCCC CTACATAAAC
AATGTTATTG AAACCAGCGG CGTGATAGAA GGCTTAAGCT ACAACGAAGC AGAAATGCTT
TCCAACCAGC TGAATGCCGG CCGCCTGCCG GTGCCGCTTG AGCCCATATA CGAGCAGACC
GTTTCACCTA CCTTGGGTCA AAACTTTGTT GACCTGGCCG TAAAAGCCGG TCTGGCAGGC
ATAATCCTGG TTATGATATT CATGATAGCC TTTTACCGCC TGCCCGGTCT GCTGGCCAGT
ATAGCTCTGG TATTTTACGG AGTAATTGTA CTGGCTCTCT TTAAACTGGT ACCGGTTACC
CTTACTTTGG CGGGTATCGG CGGTTTCATT GTATCAGCAG GTATGGCAGT AGATGCCAAT
ATCCTGATAT TTGCCCGTTT GAAAGAGGAA CTGCTGGCTG GCAAGACACT GGGAGCGGCG
GTGGAAGCCG GCTTTTCCCG TGCCTGGTCT GCCATCTGGG ACTCCAACGT TACCACCTTT
ATAGCCTGCG GAATCCTGTT CTGGGTGGGC GGTACTATTG CGGCCGGGGC ACCGGTCAAA
GGTTTTGCCG TAACCCTGTT CCTGGGTGTG GCGGTCAGTA TGTTCACCGC TATCTTTGTC
ACCCGCACCT TGCTCAGGCT TTTTGTAGGT ACTAAAACCG CTAAAAAGCT TGCCCTATTC
ACCACCCAGA CAAGAGGCAA AAATGAATAA
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| Protein sequence | MRRKNGLVFL AILAAMILAF TIVLPTDKGA LLGKGILFGL DLKGGLHMVY QADLSNVDES
NIDSVMDGVV EVISNRINPL GVTEASIQRQ GDDRIVVELP GLDITDEQKA RIGRTALLEF
GELAAEGEDY KWENSLGKWK PATATIDGVE YALTSAYFKD STYVNRDQYG NILLVFEWDD
IGAQLSKEIT TRLLSQQLGI FEGDEALAGD DGVPIAPYIN NVIETSGVIE GLSYNEAEML
SNQLNAGRLP VPLEPIYEQT VSPTLGQNFV DLAVKAGLAG IILVMIFMIA FYRLPGLLAS
IALVFYGVIV LALFKLVPVT LTLAGIGGFI VSAGMAVDAN ILIFARLKEE LLAGKTLGAA
VEAGFSRAWS AIWDSNVTTF IACGILFWVG GTIAAGAPVK GFAVTLFLGV AVSMFTAIFV
TRTLLRLFVG TKTAKKLALF TTQTRGKNE
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