Gene DET0330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDET0330 
Symbol 
ID3230398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides ethenogenes 195 
KingdomBacteria 
Replicon accessionNC_002936 
Strand+ 
Start bp314201 
End bp315226 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content53% 
IMG OID637119897 
Producthistone deacetylase family protein 
Protein accessionYP_181077 
Protein GI57234929 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGTGG GGCTGGTTTA TAACCATATA TATTTGAACC ACGAAACGGG TACCCATGTG 
GAAAACCCTG ACCGCCTGCT GGCGATTATG GAATACATAA ATACGCATGG GCTGAAAGAC 
CGTCTGGTAC ATGTTGAGCC GAAACGGGTG GGTTTGGGTG AACTGGAGGG TTTTCATACC 
CGCAAGTATA TCAGCCGGGT GGAGGAAGTG GGTTTCAGCG GCGGCGGCTG GCTGGACCAG 
GATACGGTGA TTTCGGTGGA TAGCTACGAA ACAGCCCTGT ACGCGGTGGG CGGGGTGCTT 
GAGGGGGTGG ACAAGGTGCT TTCAGGTGAA CTGGAGAGTG CTTTTGTAAT GTGCCGCCCG 
CCGGGTCACC ATGCCCTGCC GGAGGCTTCC ATGGGTTTCT GTATTTTTAA TAATGTGGCT 
TTAGGGGCTT TGCATGCCCT TAATAAACAT AGACTCAAGC GGGTGGCGGT GGTGGATTTT 
GATGTTCACC ATGGCAATGG CATTCAGCAT GTCTGCCTGA ATGACCCGCG GGTGACCTAT 
ATTTCCACCC ACCAGATTCA CCATTTCCCC TTTACGGGGG ACAGCTGTGA AGACGGCCCG 
TTTCAGAATA TTTTAAATAT CCCCCTGCCT GCCGGCTGCG GGGACAGCCA TTACCAGAAA 
GTATTTGACC AGCTGATTTG CCCGTACCTT CGGAAACTAT CACCTGAGCT GATACTGGTA 
TGTGCCGGTT ATGATGCCCA TTTTGCTGAT GATATGGGTG AGATGTGCCT TTCACAGCAG 
GGTTTTGCCG GTATAACCCG TGCCCTGAAA AAGACGGCGG ATGAGGTCTG CGGGGGAAAA 
ATGGTTTTCA GTCTGGAGGG CGGCTACCAT TATCTGGGTC TGGCAGAGAG CGTGGGGGCT 
AGCCTTGCGG TTTTATTAGA TGAGGCTTTG CCTCCCCCTA ATACCAAAGC CCCCGAAGAG 
ACTGCGGATA CGCCTGATAT CAGCGGGCTG ATTCTGGAGT TACGGGGTAT TTTCGGGATT 
AGCTAA
 
Protein sequence
MAVGLVYNHI YLNHETGTHV ENPDRLLAIM EYINTHGLKD RLVHVEPKRV GLGELEGFHT 
RKYISRVEEV GFSGGGWLDQ DTVISVDSYE TALYAVGGVL EGVDKVLSGE LESAFVMCRP 
PGHHALPEAS MGFCIFNNVA LGALHALNKH RLKRVAVVDF DVHHGNGIQH VCLNDPRVTY 
ISTHQIHHFP FTGDSCEDGP FQNILNIPLP AGCGDSHYQK VFDQLICPYL RKLSPELILV 
CAGYDAHFAD DMGEMCLSQQ GFAGITRALK KTADEVCGGK MVFSLEGGYH YLGLAESVGA 
SLAVLLDEAL PPPNTKAPEE TADTPDISGL ILELRGIFGI S