| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DET0187 |
|---|
| Symbol | |
|---|
| ID | 3230527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides ethenogenes 195 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002936 |
|---|
| Strand | - |
|---|
| Start bp | 180662 |
|---|
| End bp | 183643 |
|---|
| Gene Length | 2982 bp |
|---|
| Protein Length | 993 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637119754 |
|---|
| Product | formate dehydrogenase, alpha subunit |
|---|
| Protein accession | YP_180935 |
|---|
| Protein GI | 57235057 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.125328 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTCTC AGTTTAGTAG GCGAGATTTC CTCAAGATCA GCGGAGGGAC CGCGGGTCTC
TTTGCCACAG CTGGTCTTTT CCGTGGACCC ATCAAGGGTG TTGAGCCCAC GATGGTTGAC
ACGCGCCCCC GGTGGGTAAA AGAAACCACC ACCATCTGTC CCTTTGACGC CAGCGGTTGC
GGATTTATCT GCTATACCGA TTCGGCCGGC AACCTCACCA ATATGGAAGG TGATCCTGAT
AATCCAGTAA ATCGGGGGAG TGCCTGTTCC AAGGGTGCTT CACTGATTCA GCTTCACAAT
AACAAACACC GTCTAGAAAA GGTGCTTTAC CGTGCCGCCG GTGCAAGTGA TTGGGAAGAG
AAAAGCTGGG ATTGGGCCCT TGGTGAAATT GCCAACAAGG TAAAAGCCAG CCGTGACAGC
GGGTTTGTAG CTACAAATGC TGCCGGCAAG ACTGTCAACC GCACCGAGGC TATTGCCTCA
CTGGGCGGGG CTACACTGGA CAACGAAGAA TGTTATCTGC TGTCCAAGAT GCTTCGCGCC
CTGGGTATTG TCTACCTGGA CAGCCAGGCC AGACTGAGTA CCGCTTCCAG CCTGGAAGCC
CTGGCGGCTT CATTCGGGCA TCATGCCATG AACAACAGCT GGACGGATAT CAGCAACGCC
AATGTCATTT TGGACATGGG CGGTAACCCG GCTGAAAACT ACCCCGCCTG TTTCTCCCAT
TTGGGTGAAG CCATGGGCAA AGGGACAGAG CTTATCAGCG TTGACTGCCG CCTGACCCGG
ACTGCGGCCA AGGCCGGCAC ATTCGTTGCC GCCCGCTCCG GTTCGGAGAT TGCCTTTACC
GGCGGTCTTA TCAAGTATGT CATTGCTGAT ATTGAAGCCC ACCCCGCAAA TTACAACCTG
ACTTATATTA CCGAGTACAC CACTGCCGGC ATGGTAGTAA ATTCCAACTT CAAGGGCCCG
GCTGATTTGG ACGGTATGTT TACCGGTTAC AACTCCGCCA GCCATTCTTA CGACCAGTCA
AACTGGAGTT TTGCCAAAGC CAGCAACGGC GACCCGATAA TAGACAAAAC CCTGACCAAC
CCCAACTGTG TCTTCCAGCT TTTGAAGAAG CAATATGCCC GTTACACCCC GGAAATGGTA
GCCGCAACCT GTGGCTGCTC TCAGGCTGAT TTTGCAAAGG TCTGTGCCTC TTTTGCCTCA
ACCGGCAAAG CTGACAAGGC CGGCGCTATT ATCTACGCCA TGAGCTCCAC CCAGCACACT
TCCGGCGCTC AGACAGTCCG GGCTTATGCC ATACTTCAGA TGCTGCTGGG CAATATCGGC
GTATCCGGCG GCGGTTTATT CGCCCTGGGC GGCGAATCTA ACGTACAGGG TGCAGCCGAC
AATGGTGTTG CCTGGAACAA ACTGCCCGGT TATTTATCTG CCCCCACTGA AGATGACACC
AATTTTGCTG CTTTTGCCGC TAAATCCAGC GAGCAGAACG CAGCCAGCCT TTTGAAGGCC
TGGTACGGCT CTAATGCCTC CAGCTCAAAT GGCTTTGGTT TCAGCTTCCT GCCCAAGACA
GATACAAATA CCGATTACTC TTATGTAAAT GCTATCAAGC AGATGGCTGC CGGCACTATC
AAAGGTGCTT TCGCCTGGGG TGCAAACCCG GTGGTTGAAA GTGCCGCTGC CGCTCAAGCC
ACTCAAGCCC TGGCTAAACT GGACTGGCTG GTAGTGACAG ATATGTTTGA ATCTGAAACT
GCCGCTTTCT GGAAGAAAGA AGGCATCAGT TCACAAACCG AAGTCTTCCT GCTGCCCGCC
GCCTGTTCTT ATGAAAAGGA AGGCAGCGTA ACCAATGCCG ACCGCTGGGT ACAGTGGCGG
AACCAGGCCG TAAATGCTCC GGGTGAAGCC AAATCCGAGC TGGAGGTTAT CAGCTCCCTG
TTTAGCCGCA TTCAGTCCCT TTATCAGGGC GAAAGCGCTC TTAATGCAGA AGCTATCACC
AAGCTCAGCT GGACTTACAG CACCAACCCC TCTGCGGCTG ACGTAGCCAA AGAGATGAAC
GGCTATAAAG TATCTTCCCT GCAGCAGCTT GAAAGCCCTG AAGAGCTGAG GACGGACGGA
ACGGTTGCCT GCGGCAACAA TCTTTATGTC GGCAGCTTTA CAGATGCCGG TAACCAGATG
GCGCGCCGCG AACAGACCGG TGTCTTCCAT GCCGGTTGGG CCTGGAGCTG GCCGGTGAAT
ATCCGTATCC TGAACAACCG GGCTTCAGTT GACCTGAGCG GCCAGCCCTT CAATGCGGCT
AAACCCGTTG TCAGCTGGAA CGGTATGGGT TGGAGCGGTG ACATTGTTGA CGGCAATAAC
CCCCCGGTTA ATCAGAGCGG CGGACTGCCC TTCAAAGGCA CAAGCGGCAG TCAAGGACAA
CTCTTTGCCG CTATGGCTGA CGGCCCCATG CCCGAACATT ACGAACCCTG GGAAAGCCCG
GTGGACAATG CTCTGTCCGG CACCCAGAAT AATCCGGCCG CTATGGTCTT TGAGGGCGAC
ACTAAGGGCA GTGCCGGTGA ATATCCGGTT ATCTGCACTA CTGTACGCAC CGTTGAGCAT
AGTCTGGGCG GAGAACTAAC CCGCAATATG CCTTTCCTGG TAGAACTTGC CCCGGCCGCT
TATGTGGAAA TATCCGAACA GCTGGCCAGC GAAAAGGGTA TCAAAGCCGG TGATATTGTA
AAACTGACCT CGGCCAGAGG CAGCGTGTCA GTGGCTGCGG CCGTTACCAA GCGACTTAAA
CCATTCAGTA TTGGCGGCAA GACTGTTCAT CAGGTAGCTA TACCCTATCA CTGGGGCTTT
ATGGGAATTG CACAGGGTGA CAGTGCCAAC ACACTTGCCC CGAACACCGC AGACTCCAAC
TCCTCCACTC CTGAGTTCAA GGCGTTCCTG GTCAAGGTGG AAAAAGAAGC CGACGGTACC
GTACCGACCA TTACCGGACG CTACAAGGTA CTTGAGGACT AA
|
|---|
| Protein sequence | MRSQFSRRDF LKISGGTAGL FATAGLFRGP IKGVEPTMVD TRPRWVKETT TICPFDASGC
GFICYTDSAG NLTNMEGDPD NPVNRGSACS KGASLIQLHN NKHRLEKVLY RAAGASDWEE
KSWDWALGEI ANKVKASRDS GFVATNAAGK TVNRTEAIAS LGGATLDNEE CYLLSKMLRA
LGIVYLDSQA RLSTASSLEA LAASFGHHAM NNSWTDISNA NVILDMGGNP AENYPACFSH
LGEAMGKGTE LISVDCRLTR TAAKAGTFVA ARSGSEIAFT GGLIKYVIAD IEAHPANYNL
TYITEYTTAG MVVNSNFKGP ADLDGMFTGY NSASHSYDQS NWSFAKASNG DPIIDKTLTN
PNCVFQLLKK QYARYTPEMV AATCGCSQAD FAKVCASFAS TGKADKAGAI IYAMSSTQHT
SGAQTVRAYA ILQMLLGNIG VSGGGLFALG GESNVQGAAD NGVAWNKLPG YLSAPTEDDT
NFAAFAAKSS EQNAASLLKA WYGSNASSSN GFGFSFLPKT DTNTDYSYVN AIKQMAAGTI
KGAFAWGANP VVESAAAAQA TQALAKLDWL VVTDMFESET AAFWKKEGIS SQTEVFLLPA
ACSYEKEGSV TNADRWVQWR NQAVNAPGEA KSELEVISSL FSRIQSLYQG ESALNAEAIT
KLSWTYSTNP SAADVAKEMN GYKVSSLQQL ESPEELRTDG TVACGNNLYV GSFTDAGNQM
ARREQTGVFH AGWAWSWPVN IRILNNRASV DLSGQPFNAA KPVVSWNGMG WSGDIVDGNN
PPVNQSGGLP FKGTSGSQGQ LFAAMADGPM PEHYEPWESP VDNALSGTQN NPAAMVFEGD
TKGSAGEYPV ICTTVRTVEH SLGGELTRNM PFLVELAPAA YVEISEQLAS EKGIKAGDIV
KLTSARGSVS VAAAVTKRLK PFSIGGKTVH QVAIPYHWGF MGIAQGDSAN TLAPNTADSN
SSTPEFKAFL VKVEKEADGT VPTITGRYKV LED
|
|---|
| |